API for mani2012/PathoStat
PathoStat Statistical Microbiome Analysis Package

Global functions
Chisq_Test_Pam Man page Source code
Fisher_Test_Pam Man page Source code
GET_PAM Man page Source code
PathoStat-class Man page
TranslateIdToTaxLevel Man page Source code
Wilcox_Test_df Man page Source code
checkregion Source code
confinterval Source code
coreOTU Man page Source code
coreOTUModule Man page Source code
coreOTUModuleUI Man page Source code
coreOTUNormalize Man page Source code
coreOTUQuantile Man page Source code
createPathoStat Man page Source code
findRAfromCount Man page Source code
findSelectedTaxonId Source code
findTaxonLevel Man page Source code
findTaxonLevelData Man page Source code
findTaxonLevels Source code
findTaxonMat Man page Source code
findTaxonomy Man page Source code
formatTaxTable Man page Source code
getShinyInput Man page Source code
getShinyInputCombat Man page Source code
getShinyInputOrig Man page Source code
getSignatureFromMultipleGlmnet Man page Source code
get_core Man page Source code
get_coremat Man page Source code
get_coremat_heatmap Source code
get_coremat_lineplot Man page Source code
grepTid Man page Source code
loadPathoscopeReports Man page Source code
loadPstat Man page Source code
log2CPM Man page Source code
logitcheckregion Source code
logitconfinterval Source code
pathostat Man page Source code
pathostat1 Man page
phyloseq_to_edgeR Man page Source code
plotConfRegion Man page Source code
plotHeatmapColor Man page Source code
plotPCAPlotly Man page Source code
plotPCoAPlotly Man page Source code
prop_hash Source code
proportion Source code
proportionc Source code
pstat Man page
pstat_data Man page
readPathoscopeData Man page Source code
runPathoStat Man page Source code
savePstat Man page Source code
setShinyInput Man page Source code
setShinyInputCombat Man page Source code
setShinyInputOrig Man page Source code
sizeNormalize Man page Source code
taxon_hash_update Source code
mani2012/PathoStat documentation built on Jan. 14, 2018, 8:48 p.m.