findTaxonomy: Find the taxonomy for unlimited tids
In mani2012/PathoStat: PathoStat Statistical Microbiome Analysis Package
Description
Usage
Arguments
Value
Examples
Description
Find the taxonomy for unlimited tids
Usage
1
findTaxonomy(tids)
Arguments
tids
Given taxonomy ids
Value
taxondata Data with the taxonomy information
Examples
1
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8
example_data_dir <- system.file("example/data", package = "PathoStat")
pathoreport_file_suffix <- "-sam-report.tsv"
datlist <- readPathoscopeData(example_data_dir, pathoreport_file_suffix,
input.files.name.vec = as.character(1:6))
dat <- datlist$data
ids <- rownames(dat)
tids <- unlist(lapply(ids, FUN = grepTid))
# taxonLevels <- findTaxonomy(tids[1:5])
mani2012/PathoStat documentation built on April 3, 2020, 7:41 p.m.
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Description Usage Arguments Value Examples
Description
Find the taxonomy for unlimited tids
Usage
1 | findTaxonomy(tids)
|
Arguments
tids |
Given taxonomy ids |
Value
taxondata Data with the taxonomy information
Examples
1 2 3 4 5 6 7 8 | example_data_dir <- system.file("example/data", package = "PathoStat")
pathoreport_file_suffix <- "-sam-report.tsv"
datlist <- readPathoscopeData(example_data_dir, pathoreport_file_suffix,
input.files.name.vec = as.character(1:6))
dat <- datlist$data
ids <- rownames(dat)
tids <- unlist(lapply(ids, FUN = grepTid))
# taxonLevels <- findTaxonomy(tids[1:5])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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