findTaxonomy: Find the taxonomy for unlimited tids

Description Usage Arguments Value Examples

View source: R/taxonomy.R

Description

Find the taxonomy for unlimited tids

Usage

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Arguments

tids

Given taxonomy ids

Value

taxondata Data with the taxonomy information

Examples

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example_data_dir <- system.file("example/data", package = "PathoStat")
pathoreport_file_suffix <- "-sam-report.tsv"
datlist <- readPathoscopeData(example_data_dir, pathoreport_file_suffix,
input.files.name.vec = as.character(1:6))
dat <- datlist$data
ids <- rownames(dat)
tids <- unlist(lapply(ids, FUN = grepTid))
# taxonLevels <- findTaxonomy(tids[1:5])

mani2012/PathoStat documentation built on April 3, 2020, 7:41 p.m.