Files in mani2012/PathoStat
PathoStat Statistical Microbiome Analysis Package

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/allClasses.R R/biomarker.R R/differentialAnalysis.R R/pathoStat.R R/taxonomy.R R/utils.R R/visualization.R README.md
data/asthma_pstat_data.rda
data/pstat_data.rda
data/pstat_data_2_L1.rda
data/pstat_data_2_L2.rda
inst/example/data/Sample_01_1-sam-report.tsv
inst/example/data/Sample_01_2-sam-report.tsv
inst/example/data/Sample_01_3-sam-report.tsv
inst/example/data/Sample_02_1-sam-report.tsv
inst/example/data/Sample_02_2-sam-report.tsv
inst/example/data/Sample_02_3-sam-report.tsv
inst/example/data/Sample_03_1-sam-report.tsv
inst/example/data/Sample_03_2-sam-report.tsv
inst/example/data/Sample_03_3-sam-report.tsv
inst/example/data/count_example/annotation_example.csv
inst/example/data/count_example/count_example.csv
inst/example/data/count_example/taxonomy_table.csv
inst/example/data/pathoscope_example/Sample_01_1-sam-report.tsv
inst/example/data/pathoscope_example/Sample_01_2-sam-report.tsv
inst/example/data/pathoscope_example/Sample_01_3-sam-report.tsv
inst/example/data/pathoscope_example/Sample_02_1-sam-report.tsv
inst/example/data/pathoscope_example/Sample_02_2-sam-report.tsv
inst/example/data/pathoscope_example/Sample_02_3-sam-report.tsv
inst/example/data/pathoscope_example/Sample_03_1-sam-report.tsv
inst/example/data/pathoscope_example/Sample_03_2-sam-report.tsv
inst/example/data/pathoscope_example/Sample_03_3-sam-report.tsv
inst/example/data/pathoscope_example/sample_data.tsv
inst/example/data/sample_data.tsv
inst/example/pathostat_pipeline.R inst/shiny/PathoStat/helpers.R inst/shiny/PathoStat/server.R inst/shiny/PathoStat/ui.R inst/shiny/PathoStat/ui_01_upload.R inst/shiny/PathoStat/ui_02_filter.R inst/shiny/PathoStat/ui_07_biomarker.R
inst/shiny/PathoStat/www/ajax-loader-bar.gif
inst/shiny/PathoStat/www/bootstrap.min.css
inst/shiny/PathoStat/www/bu_bioinfo_logo.png
inst/shiny/PathoStat/www/bu_logo.png
inst/shiny/PathoStat/www/cbm_logo.jpeg
inst/shiny/PathoStat/www/count_table_example.png
man/Bootstrap_LOOCV_LR_AUC.Rd man/Chisq_Test_Pam.Rd man/Fisher_Test_Pam.Rd man/GET_PAM.Rd man/LOOAUC_simple_multiple_noplot_one_df.Rd man/LOOAUC_simple_multiple_one_df.Rd man/PathoStat-class.Rd man/TranslateIdToTaxLevel.Rd man/Wilcox_Test_df.Rd man/findRAfromCount.Rd man/findTaxonMat.Rd man/findTaxonomy.Rd man/formatTaxTable.Rd man/getShinyInput.Rd man/getShinyInputCombat.Rd man/getShinyInputOrig.Rd man/getSignatureFromMultipleGlmnet.Rd man/grepTid.Rd man/loadPathoscopeReports.Rd man/loadPstat.Rd man/log2CPM.Rd man/percent.Rd man/phyloseq_to_edgeR.Rd man/plotHeatmapColor.Rd man/plotPCAPlotly.Rd man/plotPCoAPlotly.Rd man/pstat_data.Rd man/readPathoscopeData.Rd man/runPathoStat.Rd man/savePstat.Rd man/setShinyInput.Rd man/setShinyInputCombat.Rd man/setShinyInputOrig.Rd man/summarizeTable.Rd tests/testthat.R tests/testthat/test_try.R vignettes/PathoStat-vignette.Rmd
mani2012/PathoStat documentation built on June 6, 2018, 3:19 p.m.