PathoStat: PathoStat Statistical Microbiome Analysis Package

Given PAM and disease/control annotation, do Chi-square test for each row of PAM

1	Fisher_Test_Pam(pam, label.vec.num, pvalue.cutoff = 0.05)

`pam`	Input data object that contains the data to be tested. Required
`label.vec.num`	The target binary condition. Required
`pvalue.cutoff`	choose p-value cut-off

df.output object

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tmp <- matrix(rbinom(12,1,0.5), nrow = 3)
rownames(tmp) <- c("a", "b", "c")
Fisher_Test_Pam(tmp, c(1,1,0,0))

mani2012/PathoStat documentation built on April 3, 2020, 7:41 p.m.

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