TranslateIdToTaxLevel: Find the taxonomy for the given taxon id name
In mani2012/PathoStat: PathoStat Statistical Microbiome Analysis Package
Description
Usage
Arguments
Value
Examples
Description
Find the taxonomy for the given taxon id name
Usage
1
TranslateIdToTaxLevel(pstat, input.id.vec, tax.level)
Arguments
pstat
pathostat object
input.id.vec
names containing id
tax.level
target taxon level
Value
target taxon level names
Examples
1
2
3
4
5
6
7
data_dir_test <- system.file("data", package = "PathoStat")
pstat_test <- loadPstat(indir=data_dir_test,
infileName="pstat_data_2_L1.rda")
names.new <- TranslateIdToTaxLevel(pstat_test,
c("ti|862962|org|Bacteroides_fragilis_638R",
"ti|697329|org|Ruminococcus_albus_7" ),
"genus")
mani2012/PathoStat documentation built on April 3, 2020, 7:41 p.m.
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Description Usage Arguments Value Examples
Description
Find the taxonomy for the given taxon id name
Usage
1 | TranslateIdToTaxLevel(pstat, input.id.vec, tax.level)
|
Arguments
pstat |
pathostat object |
input.id.vec |
names containing id |
tax.level |
target taxon level |
Value
target taxon level names
Examples
1 2 3 4 5 6 7 | data_dir_test <- system.file("data", package = "PathoStat")
pstat_test <- loadPstat(indir=data_dir_test,
infileName="pstat_data_2_L1.rda")
names.new <- TranslateIdToTaxLevel(pstat_test,
c("ti|862962|org|Bacteroides_fragilis_638R",
"ti|697329|org|Ruminococcus_albus_7" ),
"genus")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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