plotPCoAPlotly: Plot PCoA

In mani2012/PathoStat: PathoStat Statistical Microbiome Analysis Package

Description

Plot PCoA

Usage

plotPCoAPlotly(physeq.input, condition.color.vec,
  condition.color.name = "condition", condition.shape.vec = NULL,
  condition.shape.name = "condition", method = "bray",
  columnTitle = "Title", pc.a = "Axis.1", pc.b = "Axis.2")

Arguments

physeq.input	Input data object that contains the data to be plotted. Required
condition.color.vec	color vector. Required
condition.color.name	color variable name. Required
condition.shape.vec	shape vector. Required
condition.shape.name	shape variable name. Required
method	which distance metric
columnTitle	Title to be displayed at top of heatmap.
pc.a	pc.1
pc.b	pc.2

Value

the plot

Examples

data_dir_test <- system.file("data", package = "PathoStat")
pstat_test <- loadPstat(indir=data_dir_test,
infileName="pstat_data_2_L1.rda")
plotPCoAPlotly(pstat_test, condition.color.vec = rbinom(33,1,0.5),
condition.shape.vec = rbinom(33,1,0.5))

mani2012/PathoStat documentation built on April 3, 2020, 7:41 p.m.