RCM: Fit row-column association models with the negative binomial distribution for the microbiome

Combine ideas of log-linear analysis of contingency table, flexible response function estimation and empirical Bayes dispersion estimation for explorative visualization of microbiome datasets. The package includes unconstrained as well as constrained analysis.

Getting started

Package details

AuthorStijn Hawinkel <stijn.hawinkel@ugent.be>
Bioconductor views DimensionReduction Metagenomics Microbiome Visualization
MaintainerJoris Meys <joris.meys@ugent.be>
URL https://bioconductor.org/packages/release/bioc/vignettes/RCM/inst/doc/RCMvignette.html/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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RCM documentation built on Nov. 8, 2020, 5:22 p.m.