getRowMat: Return a matrix of row scores

In RCM: Fit row-column association models with the negative binomial distribution for the microbiome

Description

Return a matrix of row scores

Usage

getRowMat(sampleScore, responseFun, NB_params, taxonCoef, spline)

Arguments

sampleScore	a vector of length n with sample scores
responseFun	a character string, the type of response function, either 'linear' or 'quadratic'
NB_params	a v-by-p matrix of parameters of theresponse function
taxonCoef	A vector of coefficients
spline	The cubic smoothing spline Multiplying the old offset with the exponent matrix times the importance parameter obtains the new one based on lower dimension

Value

a n-by-p matrix of scores

RCM documentation built on Nov. 8, 2020, 5:22 p.m.