dNBllcol_constr: The score function of the response function for 1 taxon at...

In RCM: Fit row-column association models with the negative binomial distribution for the microbiome

Description

The score function of the response function for 1 taxon at the time

Usage

dNBllcol_constr(betas, X, reg, theta, muMarg, psi, allowMissingness, naId)

Arguments

betas	a vector of v parameters of the response function of a single taxon
X	the count vector of length n
reg	a n-by-v matrix of regressors
theta	The dispersion parameter of this taxon
muMarg	offset of length n
psi	a scalar, the importance parameter
allowMissingness	A boolean, are missing values present
naId	The numeric index of the missing values in X Even though this approach does not imply normalization over the parameters of all taxa, it is very fast and they can be normalized afterwards

Value

A vector of length v with the evaluation of the score functions

RCM documentation built on Nov. 8, 2020, 5:22 p.m.