dNBlibSizes: A score function for the row components of the independence...
In RCM: Fit row-column association models with the negative binomial distribution for the microbiome
Description
Usage
Arguments
Value
View source: R/F_dNBlibSizes.R
Description
A score function for the row components of the independence model
(library sizes)
Usage
1
dNBlibSizes(beta, X, reg, thetas, allowMissingness, naId)
Arguments
beta
a vector of length n with current library size estimates
X
a n-by-p count matrix
reg
a vector of length p with relative abundance estimates
thetas
a n-by-p matrix with overdispersion estimates in the rows
allowMissingness
A boolean, are missing values present
naId
The numeric index of the missing values in X
Value
a vector of length n with evaluations of the score function
RCM documentation built on Nov. 8, 2020, 5:22 p.m.
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Description Usage Arguments Value
View source: R/F_dNBlibSizes.R
Description
A score function for the row components of the independence model (library sizes)
Usage
1 | dNBlibSizes(beta, X, reg, thetas, allowMissingness, naId)
|
Arguments
beta |
a vector of length n with current library size estimates |
X |
a n-by-p count matrix |
reg |
a vector of length p with relative abundance estimates |
thetas |
a n-by-p matrix with overdispersion estimates in the rows |
allowMissingness |
A boolean, are missing values present |
naId |
The numeric index of the missing values in X |
Value
a vector of length n with evaluations of the score function
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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