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Fit row-column association models with the negative binomial distribution for the microbiome

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inertia: Calculate the log-likelihoods of all possible models

inertia: Calculate the log-likelihoods of all possible models
In RCM: Fit row-column association models with the negative binomial distribution for the microbiome

Description Usage Arguments Value Examples

View source: R/F_inertia.R

Description

Calculate the log-likelihoods of all possible models

Usage

1
inertia(rcm)

Arguments

rcm

an object of the RCM class

Value

A table with inertias, proportion inertia explained and cumulative proportion of inertia explained.

Examples

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data(Zeller)
require(phyloseq)
tmpPhy = prune_taxa(taxa_names(Zeller)[1:100],
prune_samples(sample_names(Zeller)[1:50], Zeller))
zellerRCM = RCM(tmpPhy, round = TRUE)
inertia(zellerRCM)

RCM documentation built on Nov. 8, 2020, 5:22 p.m.

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