NBjacobianAbunds: Jacobian for the column components of the independence model

In RCM: Fit row-column association models with the negative binomial distribution for the microbiome

Description

Jacobian for the column components of the independence model

Usage

NBjacobianAbunds(beta, X, reg, thetas, allowMissingness, naId)

Arguments

beta	a vector of length p with current abundance estimates
X	a n-by-p count matrix
reg	a vector of length n with library sizes estimates
thetas	a n-by-p matrix with overdispersion estimates in the rows
allowMissingness	A boolean, are missing values present
naId	The numeric index of the missing values in X

Value

a diagonal matrix of dimension p with evaluations of the jacobian function

RCM documentation built on Nov. 8, 2020, 5:22 p.m.