CenterForStatistics-UGent/RCM: Fit row-column association models with the negative binomial distribution for the microbiome

Combine ideas of log-linear analysis of contingency table, flexible response function estimation and empirical Bayes dispersion estimation for explorative visualization of microbiome datasets. The package includes unconstrained as well as constrained analysis. In addition, diagnostic plot to detect lack of fit are available.

Getting started

Package details

Bioconductor views DimensionReduction Metagenomics Microbiome Visualization
Maintainer
LicenseGPL-2
Version1.11.1
URL https://bioconductor.org/packages/release/bioc/vignettes/RCM/inst/doc/RCMvignette.html/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("CenterForStatistics-UGent/RCM")
CenterForStatistics-UGent/RCM documentation built on Nov. 30, 2021, 3:32 p.m.