estNBparams: A function to estimate the taxon-wise NB-params

View source: R/F_estNBparams.R

estNBparamsR Documentation

A function to estimate the taxon-wise NB-params

Description

A function to estimate the taxon-wise NB-params

Usage

estNBparams(
  design,
  thetas,
  muMarg,
  psi,
  X,
  nleqslv.control,
  ncols,
  initParam,
  v,
  dynamic = FALSE,
  envRange,
  allowMissingness,
  naId
)

Arguments

design

an n-by-v design matrix

thetas

a vector of dispersion parameters of length p

muMarg

an offset matrix

psi

a scalar, the importance parameter

X

the data matrix

nleqslv.control

a list of control elements, passed on to nleqslv()

ncols

an integer, the number of columns of X

initParam

a v-by-p matrix of initial parameter estimates

v

an integer, the number of parameters per taxon

dynamic

a boolean, should response function be determined dynamically? See details

envRange

a vector of length 2, giving the range of observed environmental scores

allowMissingness

A boolean, are missing values present

naId

The numeric index of the missing values in X

If dynamic is TRUE, quadratic response functions are fitted for every taxon. If the optimum falls outside of the observed range of environmental scores, a linear response function is fitted instead

Value

a v-by-p matrix of parameters of the response function


CenterForStatistics-UGent/RCM documentation built on April 24, 2023, 8:26 p.m.