CenterForStatistics-UGent/RCM
Fit row-column association models with the negative binomial distribution for the microbiome

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Functions
145
Source code
79
Man pages
70
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CenterForStatistics-UGent/RCM: Fit row-column association models with the negative binomial distribution for the microbiome
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API

API for CenterForStatistics-UGent/RCM
Fit row-column association models with the negative binomial distribution for the microbiome

Global functions
GramSchmidt Man page Source code
JacCol_constr Man page Source code
JacCol_constr_noLab Man page Source code
LR_nb Man page Source code
LR_nb_Jac Man page Source code
NBalphaInfl Man page Source code
NBcolInfl Man page Source code
NBjacobianAbunds Source code
NBjacobianAbundsOld Man page Source code
NBjacobianCol Source code
NBjacobianColNP Man page Source code
NBjacobianColOld Man page Source code
NBjacobianLibSizes Man page Source code
NBjacobianPsi Man page Source code
NBjacobianRow Man page Source code
NBpsiInfl Man page Source code
NBrowInfl Man page Source code
RCM Man page
RCM,matrix-method Man page
RCM,phyloseq-method Man page
RCM_NB Man page Source code
Zeller Man page
addOrthProjection Man page Source code
arrayprod Man page Source code
buildCentMat Man page Source code
buildConfMat Man page Source code
buildConfMat.character Man page Source code
buildConfMat.data.frame Man page Source code
buildConfMat.default Source code
buildCovMat Man page Source code
buildDesign Man page Source code
checkAlias Man page Source code
constrCorresp Man page Source code
correctXMissingness Man page Source code
dLR_nb Man page Source code
dNBabunds Source code
dNBabundsOld Man page Source code
dNBlibSizes Man page Source code
dNBllcol Source code
dNBllcolNP Man page Source code
dNBllcolOld Man page Source code
dNBllcol_constr Man page Source code
dNBllcol_constr_noLab Man page Source code
dNBllrow Man page Source code
dNBpsis Man page Source code
deviances Man page Source code
ellipseCoord Man page Source code
estDisp Man page Source code
estNBparams Man page Source code
estNBparamsNoLab Man page Source code
estNPresp Man page Source code
extractCoord Man page Source code
extractE Man page Source code
filterConfounders Man page Source code
getDevMat Man page Source code
getDevianceRes Man page Source code
getDistCoord Man page Source code
getInflCol Man page Source code
getInflRow Man page Source code
getInt Man page Source code
getLogLik Man page Source code
getModelMat Man page Source code
getRowMat Man page Source code
heq_nb Man page Source code
heq_nb_jac Man page Source code
indentPlot Man page Source code
inertia Man page Source code
liks Man page Source code
permanova Man page Source code
plot.RCM Man page Source code
plotRespFun Man page Source code
residualPlot Man page Source code
respFunJacMat Man page Source code
respFunScoreMat Man page Source code
rowMultiply Man page Source code
seq_k Man page Source code
trimOnConfounders Man page Source code
CenterForStatistics-UGent/RCM documentation built on April 24, 2023, 8:26 p.m.

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