dNBlibSizes: A score function for the row components of the independence...

In CenterForStatistics-UGent/RCM: Fit row-column association models with the negative binomial distribution for the microbiome

A score function for the row components of the independence model (library sizes)

Description

A score function for the row components of the independence model (library sizes)

Usage

dNBlibSizes(beta, X, reg, thetas, allowMissingness, naId)

Arguments

beta	a vector of length n with current library size estimates
X	a n-by-p count matrix
reg	a vector of length p with relative abundance estimates
thetas	a n-by-p matrix with overdispersion estimates in the rows
allowMissingness	A boolean, are missing values present
naId	The numeric index of the missing values in X

Value

a vector of length n with evaluations of the score function

CenterForStatistics-UGent/RCM documentation built on April 24, 2023, 8:26 p.m.