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MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis
Facilitate the description, transformation, exploration, and reproducibility of metabarcoding analyses. 'MiscMetabar' is mainly built on top of the 'phyloseq', 'dada2' and 'targets' 'R' packages. It helps to build reproducible and robust bioinformatics pipelines in 'R'. 'MiscMetabar' makes ecological analysis of alpha and beta-diversity easier, more reproducible and more powerful by integrating a large number of tools. Important features are described in Taudière A. (2023) <doi:10.21105/joss.06038>.
Getting started
Browse package contents
Package details |
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| Author | Adrien Taudière [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-1088-1182>) |
| Bioconductor views | Classification Clustering Metagenomics Microbiome Sequencing Visualization |
| Maintainer | Adrien Taudière <adrien.taudiere@zaclys.net> |
| License | AGPL-3 |
| Version | 0.16.8 |
| URL | https://github.com/adrientaudiere/MiscMetabar https://adrientaudiere.github.io/MiscMetabar/ |
| Package repository | View on CRAN |
| Installation |
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