View source: R/dada_phyloseq.R
add_new_taxonomy_pq | R Documentation |
One of main use of this function is to add taxonomic assignment from a new database.
add_new_taxonomy_pq(physeq, ref_fasta, suffix = NULL, ...)
physeq |
(required): a |
ref_fasta |
(required) A link to a database.
Pass on to |
suffix |
(character) The suffix to name the new columns. If set to NULL (the default), the basename of the file reFasta is used. |
... |
Others arguments pass on to |
A new phyloseq-class
object with a larger slot tax_table"
Adrien Taudière
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