add_dna_to_phyloseq: Add dna in 'refseq' slot of a 'physeq' object using taxa...
In MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis
View source: R/dada_phyloseq.R
add_dna_to_phyloseq R Documentation
Add dna in refseq slot of a physeq object using taxa names and renames taxa
using prefix_taxa_names and number (default Taxa_1, Taxa_2 ...)
Description
Useful in targets bioinformatic pipeline.
Usage
add_dna_to_phyloseq(physeq, prefix_taxa_names = "Taxa_")
Arguments
physeq
(required): a phyloseq-class object obtained
using the phyloseq package.
prefix_taxa_names
(default "Taxa_"): the prefix of taxa names (eg. "ASV_" or "OTU_")
Value
A new phyloseq-class object with refseq slot and new
taxa names
MiscMetabar documentation built on Oct. 8, 2024, 1:07 a.m.
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View source: R/dada_phyloseq.R
| add_dna_to_phyloseq | R Documentation |
Add dna in refseq slot of a physeq object using taxa names and renames taxa
using prefix_taxa_names and number (default Taxa_1, Taxa_2 ...)
Description
Useful in targets bioinformatic pipeline.
Usage
add_dna_to_phyloseq(physeq, prefix_taxa_names = "Taxa_")
Arguments
physeq |
(required): a |
prefix_taxa_names |
(default "Taxa_"): the prefix of taxa names (eg. "ASV_" or "OTU_") |
Value
A new phyloseq-class object with refseq slot and new
taxa names
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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