as_binary_otu_table: Transform the otu_table of a 'phyloseq-class' object into a...
In MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis
as_binary_otu_table R Documentation
Transform the otu_table of a phyloseq-class object into a
phyloseq-class object with a binary otu_table.
Description
Useful to test if the results are not biased by sequences bias
that appended during PCR or NGS pipeline.
Usage
as_binary_otu_table(physeq, min_number = 1)
Arguments
physeq
(required): a phyloseq-class object obtained
using the phyloseq package.
min_number
(int) the minimum number of sequences to put
a 1 in the OTU table.
Value
A physeq object with only 0/1 in the OTU table
Author(s)
Adrien Taudière
Examples
data(enterotype)
enterotype_bin <- as_binary_otu_table(enterotype)
MiscMetabar documentation built on Oct. 8, 2024, 1:07 a.m.
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| as_binary_otu_table | R Documentation |
Transform the otu_table of a phyloseq-class object into a
phyloseq-class object with a binary otu_table.
Description
Useful to test if the results are not biased by sequences bias that appended during PCR or NGS pipeline.
Usage
as_binary_otu_table(physeq, min_number = 1)
Arguments
physeq |
(required): a |
min_number |
(int) the minimum number of sequences to put a 1 in the OTU table. |
Value
A physeq object with only 0/1 in the OTU table
Author(s)
Adrien Taudière
Examples
data(enterotype)
enterotype_bin <- as_binary_otu_table(enterotype)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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