DirichletMultinomial: Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

Dirichlet-multinomial mixture models can be used to describe variability in microbial metagenomic data. This package is an interface to code originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2): 1-15, as discussed further in the man page for this package, ?DirichletMultinomial.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("DirichletMultinomial")
AuthorMartin Morgan <martin.morgan@roswellpark.org>
Bioconductor views Classification Clustering Metagenomics Microbiome Sequencing
Date of publicationNone
MaintainerMartin Morgan <martin.morgan@roswellpark.org>
LicenseLGPL-3
Version1.18.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/AllGenerics.R R/dmn.R R/dmngroup.R R/roc.R R/util.R
build
build/vignette.rds
data
data/bestgrp.rda
data/fit.rda
data/xval.rda
inst
inst/doc
inst/doc/DirichletMultinomial.R
inst/doc/DirichletMultinomial.Rnw
inst/doc/DirichletMultinomial.pdf
inst/extdata
inst/extdata/TwinStudy.t
inst/extdata/Twins.csv
man
man/DMN-class.Rd man/DMNGroup-class.Rd man/DirichletMultinomial-package.Rd man/cvdmngroup.Rd man/dataobjects.Rd man/dmn.Rd man/dmngroup.Rd man/fitted.Rd man/heatmapdmn.Rd man/roc.Rd man/util.Rd
src
src/Makevars
src/Makevars.win
src/R_init_DirichletMultinomial.c
src/dirichlet_fit.c
src/dirichlet_fit.h
src/dirichlet_fit_main.c
src/dirichlet_fit_main.h
vignettes
vignettes/DirichletMultinomial.Rnw
vignettes/References.bib

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