DirichletMultinomial: Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

Dirichlet-multinomial mixture models can be used to describe variability in microbial metagenomic data. This package is an interface to code originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2): 1-15, as discussed further in the man page for this package, ?DirichletMultinomial.

AuthorMartin Morgan <martin.morgan@roswellpark.org>
Date of publicationNone
MaintainerMartin Morgan <martin.morgan@roswellpark.org>
LicenseLGPL-3
Version1.16.0

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Files

DirichletMultinomial/DESCRIPTION
DirichletMultinomial/NAMESPACE
DirichletMultinomial/R
DirichletMultinomial/R/AllGenerics.R DirichletMultinomial/R/dmn.R DirichletMultinomial/R/dmngroup.R DirichletMultinomial/R/roc.R DirichletMultinomial/R/util.R
DirichletMultinomial/build
DirichletMultinomial/build/vignette.rds
DirichletMultinomial/data
DirichletMultinomial/data/bestgrp.rda
DirichletMultinomial/data/fit.rda
DirichletMultinomial/data/xval.rda
DirichletMultinomial/inst
DirichletMultinomial/inst/doc
DirichletMultinomial/inst/doc/DirichletMultinomial.R
DirichletMultinomial/inst/doc/DirichletMultinomial.Rnw
DirichletMultinomial/inst/doc/DirichletMultinomial.pdf
DirichletMultinomial/inst/extdata
DirichletMultinomial/inst/extdata/TwinStudy.t
DirichletMultinomial/inst/extdata/Twins.csv
DirichletMultinomial/man
DirichletMultinomial/man/DMN-class.Rd DirichletMultinomial/man/DMNGroup-class.Rd DirichletMultinomial/man/DirichletMultinomial-package.Rd DirichletMultinomial/man/cvdmngroup.Rd DirichletMultinomial/man/dataobjects.Rd DirichletMultinomial/man/dmn.Rd DirichletMultinomial/man/dmngroup.Rd DirichletMultinomial/man/fitted.Rd DirichletMultinomial/man/heatmapdmn.Rd DirichletMultinomial/man/roc.Rd DirichletMultinomial/man/util.Rd
DirichletMultinomial/src
DirichletMultinomial/src/Makevars
DirichletMultinomial/src/Makevars.win
DirichletMultinomial/src/R_init_DirichletMultinomial.c
DirichletMultinomial/src/dirichlet_fit.c
DirichletMultinomial/src/dirichlet_fit.h
DirichletMultinomial/src/dirichlet_fit_main.c
DirichletMultinomial/src/dirichlet_fit_main.h
DirichletMultinomial/vignettes
DirichletMultinomial/vignettes/DirichletMultinomial.Rnw
DirichletMultinomial/vignettes/References.bib

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