jsilve24/philr: Phylogenetic partitioning based ILR transform for metagenomics data
Version 1.7.1

PhILR is short for Phylogenetic Isometric Log-Ratio Transform. This package provides functions for the analysis of compositional data (e.g., data representing proportions of different variables/parts). Specifically this package allows analysis of compositional data where the parts can be related through a phylogenetic tree (as is common in microbiota survey data) and makes available the Isometric Log Ratio transform built from the phylogenetic tree and utilizing a weighted reference measure.

Getting started

Package details

AuthorJustin Silverman
Bioconductor views Metagenomics Microbiome Sequencing Software
MaintainerJustin Silverman <[email protected]>
LicenseGPL-3
Version1.7.1
URL https://github.com/jsilve24/philr
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("jsilve24/philr")
jsilve24/philr documentation built on July 18, 2018, 4:21 p.m.