PhILR is short for Phylogenetic Isometric Log-Ratio Transform. This package provides functions for the analysis of compositional data (e.g., data representing proportions of different variables/parts). Specifically this package allows analysis of compositional data where the parts can be related through a phylogenetic tree (as is common in microbiota survey data) and makes available the Isometric Log Ratio transform built from the phylogenetic tree and utilizing a weighted reference measure.
|Bioconductor views||ImmunoOncology Metagenomics Microbiome Sequencing Software|
|Maintainer||Justin Silverman <[email protected]>|
|Package repository||View on GitHub|
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