jsilve24/philr: Phylogenetic partitioning based ILR transform for metagenomics data

PhILR is short for Phylogenetic Isometric Log-Ratio Transform. This package provides functions for the analysis of compositional data (e.g., data representing proportions of different variables/parts). Specifically this package allows analysis of compositional data where the parts can be related through a phylogenetic tree (as is common in microbiota survey data) and makes available the Isometric Log Ratio transform built from the phylogenetic tree and utilizing a weighted reference measure.

Getting started

Package details

AuthorJustin Silverman
Bioconductor views ImmunoOncology Metagenomics Microbiome Sequencing Software
MaintainerJustin Silverman <[email protected]>
URL https://github.com/jsilve24/philr
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
jsilve24/philr documentation built on Aug. 1, 2019, 5:48 p.m.