miniclo: miniclo

In jsilve24/philr: Phylogenetic partitioning based ILR transform for metagenomics data

miniclo

Description

small function to close (aka normalize by proportions, aka total sum scaling) a dataset to a constant k (usually taken to be 1). After closure the row sums of the dataset should sum to k.

Usage

miniclo(c, k = 1)

Arguments

c	dataset to be closed
k	closure constant

Value

matrix (if c is a vector or matrix) or data.frame (if c is a data.frame)

Examples

c <- matrix(c(1,2,3,1,2,3,1,2,3), nrow = 3, byrow=TRUE)
miniclo(c)
miniclo(c, k=2)

jsilve24/philr documentation built on Oct. 17, 2024, 4:59 p.m.