buildilrBasep: Weighted ILR Contrast Matrix
In jsilve24/philr: Phylogenetic partitioning based ILR transform for metagenomics data
buildilrBasep R Documentation
Weighted ILR Contrast Matrix
Description
Weighted ILR Contrast Matrix
Usage
buildilrBasep(W, p)
Arguments
W
sequantial binary partition matrix (e.g., signary matrix; output of
phylo2sbp)
p
weights (should not be closed)
Value
matrix
Author(s)
Justin Silverman (adapted from compositions::gsi.buildilrBase)
References
J. J. Egozcue, V. Pawlowsky-Glahn (2016) Changing the Reference
Measure in the Simplex and its Weighting Effects. Austrian Journal of
Statistics 45(4):25-44
Examples
p <- seq(.1,1,by=.2)
tr <- named_rtree(5)
sbp <- phylo2sbp(tr)
buildilrBasep(sbp, p)
jsilve24/philr documentation built on Oct. 17, 2024, 4:59 p.m.
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| buildilrBasep | R Documentation |
Weighted ILR Contrast Matrix
Description
Weighted ILR Contrast Matrix
Usage
buildilrBasep(W, p)
Arguments
W |
sequantial binary partition matrix (e.g., signary matrix; output of phylo2sbp) |
p |
weights (should not be closed) |
Value
matrix
Author(s)
Justin Silverman (adapted from compositions::gsi.buildilrBase)
References
J. J. Egozcue, V. Pawlowsky-Glahn (2016) Changing the Reference Measure in the Simplex and its Weighting Effects. Austrian Journal of Statistics 45(4):25-44
Examples
p <- seq(.1,1,by=.2)
tr <- named_rtree(5)
sbp <- phylo2sbp(tr)
buildilrBasep(sbp, p)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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