philr: Phylogenetic partitioning based ILR transform for metagenomics data

PhILR is short for Phylogenetic Isometric Log-Ratio Transform. This package provides functions for the analysis of compositional data (e.g., data representing proportions of different variables/parts). Specifically this package allows analysis of compositional data where the parts can be related through a phylogenetic tree (as is common in microbiota survey data) and makes available the Isometric Log Ratio transform built from the phylogenetic tree and utilizing a weighted reference measure.

Package details

AuthorJustin Silverman
Bioconductor views ImmunoOncology Metagenomics Microbiome Sequencing Software
MaintainerJustin Silverman <[email protected]>
LicenseGPL-3
Version1.8.1
URL https://github.com/jsilve24/philr
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("philr")

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philr documentation built on Jan. 5, 2019, 7:06 p.m.