Phylogenetic partitioning based ILR transform for metagenomics data

annotate_balance | annotate_balance |

buildilrBasep | Weighted ILR Contrast Matrix |

calculate.blw | Calculate Branch Length Weightings for ILR Coordinates |

convert_to_long | Converts wide format ILR transformed data to long format |

g.colMeans | Geometric Means of Columns |

g.rowMeans | Weighted Geometric Means of Rows |

mean_dist_to_tips | Mean distance from internal nodes to descendant tips |

miniclo | miniclo |

name.balance | Name a balance (coordinate) based on taxonomy |

named_rtree | Generate random tree with named internal nodes |

name_nodenumber_conversion | Convert between node/tip labels and integer node numbers |

philr | Data transformation and driver of PhILR. |

philrInv | Inverse of PhILR Transform |

phylo2sbp | Create Sequential Binary Partition from Phylogenetic Tree |

shift | Shift data to origin given by p |

weighted_clr | Weighted CLR Transform |

weighted_ilr | Weighted ILR Transform |

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