mean_dist_to_tips: Mean distance from internal nodes to descendant tips
In philr: Phylogenetic partitioning based ILR transform for metagenomics data
Description
Usage
Arguments
Details
Value
Examples
View source: R/branch_length_calculations.R
Description
Calculates the mean distance from each internal node to its descendant tips
Usage
1
mean_dist_to_tips(tree)
Arguments
tree
a phylo class tree object that is binary (see multi2di)
Details
This is a function used by calculate.blw when
method='mean.descendants', there this function is called twice, once
for each direct child of a given internal node and the results are summed
for each node.
Value
vector (named if internal nodes are named)
Examples
1
2
tr <- named_rtree(5)
mean_dist_to_tips(tr)
philr documentation built on Nov. 8, 2020, 5:38 p.m.
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Description Usage Arguments Details Value Examples
View source: R/branch_length_calculations.R
Description
Calculates the mean distance from each internal node to its descendant tips
Usage
1 | mean_dist_to_tips(tree)
|
Arguments
tree |
a |
Details
This is a function used by calculate.blw when
method='mean.descendants', there this function is called twice, once
for each direct child of a given internal node and the results are summed
for each node.
Value
vector (named if internal nodes are named)
Examples
1 2 | tr <- named_rtree(5)
mean_dist_to_tips(tr)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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