Description Usage Arguments Details Value Author(s) See Also Examples

Inverse of PhILR Transform

1 2 |

`df.ilrp` |
transformed data to which the inverse transform will be applied |

`tree` |
(optional) to be used to build sbp and contrast matrix (see details) |

`sbp` |
(optional) the sbp (sequential binary partition) used to build a contrast matrix (see details) |

`V` |
(optional) the contrast matrix (see details) |

`part.weights` |
weightings for parts, can be a named vector with names
corresponding to |

`ilr.weights` |
weightings for the ILR coordiantes can be a named vector with names
corresponding to names of internal nodes of |

This is a utility function for calculating the inverse of the
`philr`

transform. Note that at least one of the following
parameters must be specified (`tree`

, `sbp`

, or `V`

).

a matrix of compositions (rows are samples, columns are parts), function removes the effects of ilr weights, part weights, and unshifts the composition.

Justin Silverman

1 2 3 4 5 6 7 8 | ```
tr <- named_rtree(5)
df <- t(rmultinom(10,100,c(.1,.6,.2,.3,.2))) + 0.65 # add a small pseudocount
colnames(df) <- tr$tip.label
d <- philr(df, tr, part.weights='enorm.x.gm.counts',
ilr.weights='blw.sqrt', return.all=TRUE)
d.inverted <- philrInv(d$df.ilrp, V=d$V, part.weights = d$p,
ilr.weights = d$ilr.weights)
all.equal(miniclo(df), d.inverted)
``` |

```
Building Sequential Binary Partition from Tree...
Building Contrast Matrix...
Transforming the Data...
Calculating ILR Weights...
[1] TRUE
```

philr documentation built on Nov. 8, 2020, 5:38 p.m.

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