joey711/biomformat: An interface package for the BIOM file format

This is an R package for interfacing with the BIOM format. This package includes basic tools for reading biom-format files, accessing and subsetting data tables from a biom object (which is more complex than a single table), as well as limited support for writing a biom-object back to a biom-format file. The design of this API is intended to match the python API and other tools included with the biom-format project, but with a decidedly "R flavor" that should be familiar to R users. This includes S4 classes and methods, as well as extensions of common core functions/methods.

Getting started

Package details

AuthorPaul J. McMurdie <mcmurdie@alumni.stanford.edu> and Joseph N Paulson <jpaulson@jimmy.harvard.edu>
Bioconductor views DataImport ImmunoOncology Metagenomics Microbiome
MaintainerPaul J. McMurdie <mcmurdie@alumni.stanford.edu>
LicenseGPL-2
Version1.29.1
URL https://github.com/joey711/biomformat/ http://biom-format.org/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("joey711/biomformat")
joey711/biomformat documentation built on Aug. 21, 2023, 2:24 p.m.