phyloseq: Handling and analysis of high-throughput microbiome census data

phyloseq provides a set of classes and tools to facilitate the import, storage, analysis, and graphical display of microbiome census data.

Package details

AuthorPaul J. McMurdie <>, Susan Holmes <>, with contributions from Gregory Jordan and Scott Chamberlain
Bioconductor views Classification Clustering GeneticVariability ImmunoOncology Metagenomics Microbiome MultipleComparison Sequencing
MaintainerPaul J. McMurdie <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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phyloseq documentation built on Nov. 8, 2020, 6:41 p.m.