phyloseq: Handling and analysis of high-throughput microbiome census data

phyloseq provides a set of classes and tools to facilitate the import, storage, analysis, and graphical display of microbiome census data.

Package details

AuthorPaul J. McMurdie <[email protected]>, Susan Holmes <[email protected]>, with contributions from Gregory Jordan and Scott Chamberlain
Bioconductor views Classification Clustering GeneticVariability Metagenomics Microbiome MultipleComparison Sequencing
MaintainerPaul J. McMurdie <[email protected]>
LicenseAGPL-3
Version1.26.0
URL http://dx.plos.org/10.1371/journal.pone.0061217
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("phyloseq")

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phyloseq documentation built on Nov. 1, 2018, 3:31 a.m.