assign-phy_tree: Assign a (new) phylogenetic tree to 'x'

In phyloseq: Handling and analysis of high-throughput microbiome census data

Description

Assign a (new) phylogenetic tree to x

Usage

phy_tree(x) <- value

## S4 replacement method for signature 'phyloseq,phylo'
phy_tree(x) <- value

## S4 replacement method for signature 'phyloseq,phyloseq'
phy_tree(x) <- value

Arguments

x	(Required). phyloseq-class
value	(Required). phylo-class, or phyloseq-class

Examples

#
data("esophagus")
# An example of pruning to just the first 20 taxa in esophagus
ex2a <- prune_taxa(taxa_names(esophagus)[1:20], esophagus)
# The following 3 lines produces an ex2b that is equal to ex2a
ex2b <- ex2a
phy_tree(ex2b) <- phy_tree(esophagus)
identical(ex2a, ex2b)

Example output

[1] TRUE

phyloseq documentation built on Nov. 8, 2020, 6:41 p.m.