import_mothur_groups: Parse mothur group file into a simple hash table.
In phyloseq: Handling and analysis of high-throughput microbiome census data
Description
Usage
Arguments
Value
See Also
Description
The data.frame object
returned by this function is not immediately useable by other phyloseq
functions, and must be first parsed in conjunction with a separate mothur
"list" file. This function is made accessible to phyloseq users
for troubleshooting and inspection, but the link{import_mothur()} function
is suggested if the goal is to import the OTU clustering results from mothur
into phyloseq. You will need both a group file and a list file for that end.
Usage
1
import_mothur_groups(mothur_group_file)
Arguments
mothur_group_file
A character string indicating the location of the
mothur-produced group file in which the sample-source of each sequence
is recorded. See
http://www.mothur.org/wiki/Make.group
Value
A data.frame that is effectively a hash table between sequence names
and their sample source.
See Also
phyloseq documentation built on Nov. 8, 2020, 6:41 p.m.
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Description Usage Arguments Value See Also
Description
The data.frame object
returned by this function is not immediately useable by other phyloseq
functions, and must be first parsed in conjunction with a separate mothur
"list" file. This function is made accessible to phyloseq users
for troubleshooting and inspection, but the link{import_mothur()} function
is suggested if the goal is to import the OTU clustering results from mothur
into phyloseq. You will need both a group file and a list file for that end.
Usage
1 | import_mothur_groups(mothur_group_file)
|
Arguments
mothur_group_file |
A character string indicating the location of the
mothur-produced group file in which the sample-source of each sequence
is recorded. See
|
Value
A data.frame that is effectively a hash table between sequence names and their sample source.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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