import_qiime_otu_tax: Import now legacy-format QIIME OTU table as a list of two...
In phyloseq: Handling and analysis of high-throughput microbiome census data
Description
Usage
Arguments
Details
Value
See Also
Examples
Description
Now a legacy-format, older versions of QIIME
produced an OTU file that typically contains both OTU-abundance
and taxonomic identity information in a tab-delimted table.
If your file ends with the extension .biom, or if you happen to know
that it is a biom-format file, or if you used default settings in a version
of QIIME of 1.7 or greater,
then YOU SHOULD USE THE BIOM-IMPORT FUNCTION instead,
import_biom.
Usage
1
2
import_qiime_otu_tax(file, parseFunction = parse_taxonomy_qiime,
verbose = TRUE, parallel = FALSE)
Arguments
file
(Required). The path to the qiime-formatted file you want to
import into R. Can be compressed (e.g. .gz, etc.), though the
details may be OS-specific. That is, Windows-beware.
parseFunction
(Optional). An optional custom function for parsing the
character string that contains the taxonomic assignment of each OTU.
The default parsing function is parse_taxonomy_qiime,
specialized for splitting the ";"-delimited strings and also
attempting to interpret greengenes prefixes, if any, as that is a common
format of the taxonomy string produced by QIIME.
verbose
(Optional). A logical.
Default is TRUE.
Should progresss messages
be catted to standard out?
parallel
(Optional). Logical. Should the parsing be performed in
parallel?. Default is FALSE. Only a few steps are actually
parallelized, and for most datasets it will actually be faster and
more efficient to keep this set to FALSE.
Also, to get any benefit at all, you will need to register a
parallel “backend” through one of the backend packages supported
by the foreach-package.
Details
This function uses chunking to perform both the reading and parsing in blocks
of optional size,
thus constrain the peak memory usage.
feature should make this
importer accessible to machines with modest memory,
but with the caveat that
the full numeric matrix must be a manageable size at the end, too.
In principle, the final tables will be large, but much more efficiently represented than
the character-stored numbers.
If total memory for storing the numeric matrix becomes problematic,
a switch to a sparse matrix representation of the abundance
– which is typically well-suited to this data – might provide a solution.
Value
A list of two matrices. $otutab contains the OTU Table
as a numeric matrix, while $taxtab contains a character matrix
of the taxonomy assignments.
See Also
Examples
1
2
otufile <- system.file("extdata", "GP_otu_table_rand_short.txt.gz", package="phyloseq")
import_qiime_otu_tax(otufile)
Example output
Reading file into memory prior to parsing...
Detecting first header line...
Header is on line 2
Converting input file to a table...
Defining OTU table...
Parsing taxonomy table...
$otutab
AQC1cm AQC4cm AQC7cm CC1 CL3 Even1 Even2 Even3 F21Fcsw F21Plmr F21Tong
338272 0 0 0 0 0 0 0 0 34 0 0
289855 0 0 0 0 0 0 0 0 0 0 0
287759 9 5 15 1 0 0 0 1 0 0 0
334839 0 0 0 0 0 0 0 0 428 0 0
144065 2 0 0 21 191 0 0 0 0 0 0
18643 0 0 0 0 0 0 0 0 0 0 0
218985 72 168 118 174 14 0 0 0 0 0 0
238997 0 0 0 0 1 0 0 0 0 0 0
245893 0 0 0 0 0 0 0 0 0 0 0
131765 0 0 0 0 0 0 0 1 0 0 0
536982 0 0 0 0 0 0 0 0 0 0 0
351629 0 0 0 79 40 2 2 3 0 8 0
321069 0 0 0 0 0 0 0 0 0 0 0
512157 0 0 0 0 0 0 0 0 0 0 0
193230 0 0 0 0 0 3 4 0 62 0 0
107461 49 30 13 6 0 0 0 2 0 0 3
329570 0 0 0 3 5 0 0 0 0 0 0
35881 0 0 0 0 0 0 0 0 0 0 0
260458 0 0 0 1 0 0 0 0 0 0 0
279132 0 0 0 0 0 0 0 0 0 0 0
548884 22 60 54 8 1 0 0 0 0 0 0
288119 0 0 0 6 30 0 0 0 0 0 0
192899 0 0 0 0 0 0 1 2 0 0 0
531589 0 0 0 0 0 0 0 0 1 0 0
90465 3 0 0 1 0 0 0 0 0 0 0
556145 0 0 0 0 0 0 0 0 0 0 0
542118 0 0 0 1 4 0 0 1 0 0 0
513763 199 2230 2110 0 0 2 2 0 0 0 3
344513 1 0 0 0 0 0 0 0 0 0 0
141836 3 8 4 0 0 0 0 0 0 0 0
129783 0 0 0 0 0 8 9 13 0 0 0
198528 0 0 0 2 1 0 0 0 7 0 0
258229 0 0 0 0 0 0 0 0 0 0 0
70461 0 0 0 0 0 0 0 0 1 0 0
303295 0 0 4 476 517 4 1 3 0 0 0
313089 0 0 0 0 1 0 0 0 173 0 0
254133 0 0 0 6 5 0 0 0 0 0 0
276351 0 0 0 0 0 0 0 0 0 0 0
275935 1 0 0 8 220 3 0 1 0 22 0
339472 0 0 0 0 0 0 0 0 0 0 0
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175045 0 1 2 0 0 27 1 0 0 2 1
341275 327 361 580 184 227 0 3 0 0 0 1
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164557 3 1 1 0 1 0 0 0 0 0 0
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240591 258 919 1037 2144 186 5 6 0 1 2 0
88301 0 1 0 20 1 0 0 0 0 2 0
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341901 0 0 1 33 4 0 0 0 1 0 0
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509511 0 0 0 4 3 0 0 0 0 0 0
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151439 7 7 9 914 18 0 6 0 0 0 1
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12364 0 0 0 0 0 0 0 0
511687 0 6 0 0 0 0 0 0
247518 0 0 0 0 0 1 0 0
287763 0 0 0 0 0 0 0 0
144921 0 0 5 0 0 0 0 0
215890 0 0 0 0 0 1 9 1
511371 0 0 0 0 0 0 0 0
278955 0 0 1 0 0 0 0 0
10857 0 0 0 0 0 0 0 0
509572 0 0 0 3 1 6 0 0
236118 0 0 0 4 10 6 0 0
100870 0 0 0 0 1 0 0 0
137557 0 0 0 0 0 0 0 0
240686 0 0 9 0 1 0 0 0
153026 0 0 0 0 0 0 0 0
277196 0 0 0 0 0 0 1 0
279590 0 0 8 0 0 0 0 0
470599 0 0 0 0 0 0 0 0
550164 0 0 0 0 0 0 0 0
72610 0 0 0 0 0 0 0 0
550329 0 60 0 0 0 0 0 0
304950 3 0 0 182 579 400 0 0
574226 0 0 0 0 1 0 0 0
244496 2 4 0 0 0 1 1 0
89337 0 0 200 1 0 0 0 0
546723 1 0 0 0 0 0 0 0
212619 5 4 2 0 1 142 10680 1361
137099 0 0 132 0 1 0 0 0
312030 206 0 0 0 3 2 0 1
296377 0 0 0 0 1 4 352 3
487725 0 3 52 0 0 0 0 0
470823 0 0 0 0 0 0 6 0
546756 0 0 0 0 0 0 0 0
160337 0 0 88 0 0 0 0 1
556276 0 10 1 0 0 0 0 0
588981 0 0 0 0 0 0 0 0
306684 0 83 156 1 0 1 0 0
157866 0 0 0 0 1 0 0 0
238929 0 2 31 1 1 1 0 0
259028 0 0 0 29 11 46 0 0
200064 1 3 0 0 0 0 0 7
104310 0 0 28 0 0 0 0 0
152720 0 0 0 0 0 0 0 0
263307 0 0 0 0 0 0 0 0
346253 0 0 0 0 0 1 1 0
8096 0 1 277 1 25 36 0 0
245050 0 0 0 0 0 0 1 0
286030 0 0 0 0 0 0 0 0
100757 0 0 3 0 0 0 0 0
210865 0 0 0 0 0 0 0 0
261709 0 0 0 0 0 0 0 0
10517 0 0 0 0 0 0 0 0
113626 0 0 6650 2 0 0 2 1
240591 2 3 3 0 6 2 0 0
88301 0 7 43 0 0 0 0 0
585355 0 0 0 0 0 0 0 0
153762 1 0 0 0 0 0 0 0
330803 8 0 0 1 2 0 0 0
526490 0 0 0 0 0 0 0 0
258502 0 0 0 0 1 1 0 0
70379 0 0 0 0 0 0 0 0
161544 0 0 6 0 0 0 0 0
181819 3 0 0 0 1 0 0 0
292556 0 0 1 0 0 0 0 0
538794 0 2 0 0 0 0 0 0
341901 0 0 217 0 1 0 0 0
185339 0 0 0 0 0 0 0 0
547752 0 0 9 0 0 0 0 0
510626 0 0 0 0 7 1 0 0
140805 10 0 0 9 18 4 0 0
565375 0 0 28 0 0 0 0 0
534516 0 0 107 0 0 0 0 0
326644 0 0 0 0 0 0 0 0
332464 1 0 15 1 153 23 0 0
578831 0 0 1 0 0 0 0 0
556231 0 2 12 0 0 1 0 0
108870 0 0 26 0 0 0 0 0
167215 0 0 0 0 0 1 0 0
343453 0 0 0 0 0 0 0 0
315848 8 0 0 55 347 96 0 0
257176 0 0 0 0 0 0 0 0
329327 0 0 52 0 0 0 0 0
292288 0 0 0 3 48 57 0 0
213873 0 0 1 0 0 0 0 0
275402 1 0 0 2 19 13 0 0
563574 0 0 0 0 0 0 2 0
533036 0 0 0 0 0 0 0 0
591098 0 0 0 0 0 0 0 0
554003 6 0 0 130 287 372 0 0
258006 0 1 27 0 0 0 0 0
254841 0 0 1 0 0 0 0 0
307569 0 0 0 0 0 0 2 15
102209 0 0 0 0 0 0 0 0
114783 0 18 2 0 0 0 0 0
561842 0 0 4 0 0 0 0 0
204177 0 0 14 0 0 0 0 0
143463 0 0 0 0 0 0 0 0
244840 0 0 27 0 0 0 0 0
262115 0 0 219 0 0 0 0 0
309328 0 0 0 0 1 0 0 0
329074 0 0 0 0 0 1 0 0
570930 0 0 0 0 0 0 0 0
1718 0 0 7 0 0 0 0 0
89763 0 0 313 1 3 3 0 0
212596 0 0 1 0 0 1 0 0
100157 0 0 4 0 1 0 0 0
150577 0 0 0 0 1 0 0 0
291739 0 0 0 0 0 1 0 0
540283 1 0 0 0 0 0 0 0
349780 0 0 0 1 7 17 0 0
166871 1 0 1 86 1421 540 3 0
171551 29 15 55 2 6 1008 89061 59615
509511 0 0 0 0 0 0 0 0
329744 120 323914 67 83 51 28 52 48
183985 0 0 1 0 0 0 0 0
204462 0 0 0 0 0 1 0 0
165257 0 0 0 0 0 0 1 0
291710 0 0 0 0 1 2 0 0
88682 0 0 0 0 0 0 0 0
6697 0 0 0 0 0 0 0 0
136044 0 0 0 0 0 0 22 471
557121 0 0 0 0 0 0 0 0
143699 0 7 0 0 0 0 0 0
103157 5 0 0 7 0 0 0 0
157625 0 0 0 0 0 1 0 0
65695 0 0 0 0 0 0 0 0
82548 0 3 2 0 0 0 0 0
234044 0 0 0 0 0 0 0 0
280233 0 0 0 0 0 0 0 0
269778 98 0 0 2 16 3 0 0
589130 418 0 0 0 0 0 0 0
521924 0 0 0 0 0 1 0 0
165369 0 0 0 0 0 0 0 0
552779 0 0 0 0 0 0 0 0
224569 0 0 0 0 0 0 0 0
471141 138 21 13 12 18 10 17 16
151439 0 0 5 0 0 0 0 0
9510 12 6 0 3 1 1 4 1
155970 0 0 0 0 0 0 0 0
568881 0 0 0 0 0 0 0 0
113959 2 1 4 1 1 1 2 2
542003 5 0 0 0 0 0 0 0
589802 0 0 4 0 51 47 0 0
196433 0 0 0 0 1 0 0 0
139752 0 0 0 6 97 11 0 0
350732 0 0 0 0 0 0 0 0
298533 0 0 2 0 0 0 0 0
31334 0 0 0 0 1 1 0 0
139641 2 0 0 0 0 0 0 0
77467 0 0 0 0 0 0 0 0
593006 0 0 3 0 2 0 0 0
189485 0 0 0 0 0 1 14 2075
69664 0 0 0 0 0 0 1 0
136740 0 0 233 0 0 0 0 0
25695 0 0 1 0 0 0 0 0
136925 0 0 0 0 0 0 0 0
26036 0 0 0 0 0 0 0 0
514272 0 0 0 0 0 0 23 3
588882 0 0 0 5 25 0 0 0
101544 0 13 0 0 0 0 0 0
2783 0 0 0 0 0 0 0 0
218035 0 8 29 0 1 1 0 0
581733 0 4 0 0 3 2 0 0
266208 0 0 0 0 0 0 0 0
469382 0 7 0 0 0 0 0 0
144746 0 0 0 0 1 0 0 0
138816 0 0 10 0 0 0 0 0
577111 1 5 0 0 0 0 0 0
114978 0 0 1 0 0 0 0 0
154106 1 0 0 0 0 0 0 0
521453 291 1 0 0 1 1 0 0
10660 0 0 0 0 5 1 0 0
162326 6283 0 0 9 4 1 1 0
265749 6 0 0 0 0 0 0 0
583500 0 0 0 0 0 0 1 0
273850 0 0 0 0 0 0 0 0
218005 0 2 0 0 0 1 0 0
566717 0 0 0 0 0 0 0 0
10113 1 6 0 3 1 4 0 1
304270 0 0 0 0 0 0 0 0
137403 0 0 0 0 0 0 0 1
237003 0 0 0 0 0 0 1 0
512616 0 0 98 0 0 0 0 0
339015 0 0 0 0 1 0 0 0
136780 0 0 0 0 0 0 0 0
349277 0 1 0 0 0 0 0 0
109792 0 0 0 0 0 0 0 0
206278 2 15 0 0 5 0 2 20
159246 0 0 0 0 0 0 0 0
350731 0 0 0 0 0 0 0 0
588899 0 0 0 1 62 102 1 0
305967 0 0 0 2 86 242 0 0
591496 0 2 0 0 7 9 0 0
233805 0 0 0 0 0 0 0 0
536009 0 0 0 5 73 1 0 0
142784 0 0 0 0 0 0 0 0
295422 0 0 18 0 0 0 0 0
558838 0 0 0 0 0 0 0 0
113510 2 0 1 1 1 0 0 0
524765 0 0 0 0 7 2 0 0
561594 0 0 0 0 0 0 0 0
161340 0 3 9 0 0 0 0 0
313166 3 0 0 2 0 23 4 1
321885 0 0 1 0 0 0 1 0
163176 0 26 100 1 0 0 0 0
328739 0 0 0 1 60 11 0 0
268617 0 0 1 0 0 0 0 1
114029 1462 0 0 47 166 19 2 2
561793 0 6 0 0 0 0 1 2
503327 0 0 0 0 0 0 0 0
172221 1 8 0 0 0 0 1 0
93537 4 0 0 1 4 0 0 0
261774 0 4 1 0 1 0 0 1
535000 0 15 1 0 2 1 1 3
541076 0 0 0 1 6 4 0 0
13662 0 0 0 1 0 0 0 0
355680 0 2 0 0 1 0 0 0
292073 0 0 1 0 0 0 0 0
202238 0 0 0 0 0 0 0 0
112263 0 0 0 0 2 0 0 0
541602 0 0 0 0 0 0 2 0
555446 0 0 0 0 0 0 0 0
78316 0 2 0 0 0 0 0 0
588740 0 0 3 0 0 0 0 0
107184 0 1 0 0 0 0 0 0
23870 0 0 7 0 1 1 0 0
167365 0 0 1 0 0 0 1 0
184403 0 1 3 5 0 35 84 13
5552 2 7692 896 1 2 2 0 0
591182 21030 1 0 30 4 0 1 4
576085 0 0 2 1 9 5 0 0
207832 0 0 0 0 1 0 0 0
206632 0 1 1 0 0 0 1 0
584265 0 0 0 7 35 16 0 0
291610 0 0 0 0 0 0 0 0
239053 1 0 0 0 0 1 5 4
111986 0 0 3 0 1 2 1 2
166835 1 1 3 0 0 4 0 1
103589 0 4 0 0 0 0 0 0
259270 0 0 1 0 0 0 0 0
525569 0 0 0 0 0 0 0 0
144091 0 17 0 0 1 1 0 0
583211 2 8 0 0 0 0 0 1
112752 0 0 0 0 1 0 0 0
548184 0 0 0 0 0 0 0 0
193343 0 0 2 1 2 88 7845 850
565944 2 0 0 9 36 76 0 0
72374 0 0 1 0 0 0 0 0
200049 0 0 0 3 22 8 0 0
134207 0 0 0 0 0 0 0 0
546975 0 0 0 0 0 0 1 0
28512 0 0 3 0 0 0 0 0
141423 0 1 0 0 0 0 0 0
238279 0 0 0 0 0 0 0 0
570817 0 0 35 0 0 0 0 0
319724 0 0 0 0 0 0 0 0
242989 0 0 0 0 0 0 0 0
76933 0 0 0 0 0 0 0 0
128051 0 0 0 0 0 0 0 0
265094 2 0 4361 3 2 1 1 2
13333 0 1 0 0 2 0 0 0
240228 0 0 0 0 0 0 0 0
320879 2 1 0 0 2 3 3 1
276703 0 0 0 0 0 0 0 1
55727 0 0 0 0 0 0 0 0
162529 0 0 0 0 0 0 0 0
160135 0 1 22 0 3 2 0 0
262464 0 0 0 0 0 0 0 0
567145 0 0 0 0 0 0 0 0
342042 0 0 0 0 0 0 0 0
542129 0 0 0 0 0 0 0 0
214380 0 0 0 0 0 0 0 0
254706 0 1 34 0 0 1 0 0
533173 0 0 0 0 0 0 0 0
258375 0 0 0 0 0 0 0 0
527741 0 0 0 0 0 0 56 31
329313 0 0 0 0 0 0 1 0
342865 0 0 10 0 2 1 0 1
97508 1 0 0 0 1 0 0 0
250451 0 0 1 0 0 1 0 0
274500 0 0 0 0 0 0 0 0
291764 0 0 1 0 0 0 0 0
42014 1 0 0 0 31 1 0 0
257151 1 691 56 2 2 0 0 0
29284 0 5 2 7 14 2 0 0
519193 0 0 0 0 1 0 0 0
560734 0 0 3 0 0 0 0 0
568172 0 0 0 0 0 0 0 0
574961 0 0 0 0 0 0 0 0
139920 0 0 0 0 0 0 0 0
334326 0 0 0 0 0 0 0 0
328963 123 6 0 0 0 0 0 1
335530 0 0 1 0 1 3 282 181
139346 0 0 0 0 0 0 0 0
554250 0 0 0 0 0 0 0 0
513639 0 0 9 0 1 0 0 0
542353 0 0 0 0 0 0 0 0
237324 0 0 0 0 0 0 116 45
1941 0 0 0 0 0 0 0 0
237963 0 0 0 0 4 0 0 0
76142 0 0 7 0 0 0 0 0
267568 5 0 0 14 13 8 0 0
545503 0 0 1 1 1 1 0 0
114455 0 0 0 0 1 0 0 0
261663 0 0 23 0 0 0 0 0
102382 1 273 2373 2 0 0 1 0
278709 0 1 0 6 111 43 0 0
262658 0 0 0 0 0 0 1 0
558480 16 68 0 0 0 0 0 0
152931 255 0 0 1 0 0 0 0
68350 0 0 0 0 0 0 0 0
259956 0 0 0 3 0 4 0 0
556462 0 0 0 0 0 0 0 0
330861 9 1 2 60 4618 55 0 3
234421 0 0 0 1 1 6 161 325
535209 0 0 0 0 0 0 1 0
136145 0 0 0 0 0 0 0 0
588867 0 8 16 0 0 0 0 0
91919 0 0 0 0 1 1 0 0
470527 0 0 0 0 0 0 0 0
320847 0 0 12 0 0 0 0 0
215003 1 0 105 0 0 1 0 0
578409 0 0 0 0 0 0 0 0
295754 0 0 0 0 0 0 0 0
340730 0 0 0 0 1 0 0 0
272782 0 0 0 0 1 6 0 0
272261 0 0 0 0 0 0 0 0
134929 0 0 0 1 2 6 0 0
78203 0 0 0 0 0 0 0 0
248299 0 0 14 0 0 0 0 0
243335 2 0 0 0 0 0 0 0
394191 0 0 2 0 0 0 0 0
534609 15722 17 9 52 24 20 17 16
235390 0 2 0 0 0 0 0 1
98457 0 4 0 0 0 0 0 0
179213 0 0 0 0 0 3 0 0
262076 0 11 0 0 0 0 0 0
279470 0 0 0 0 0 0 0 0
560842 0 0 0 0 0 0 0 0
247816 0 0 0 0 0 0 0 0
182728 0 0 0 0 0 0 3 33
112749 0 0 0 0 0 0 0 0
362373 0 0 0 0 2 0 0 0
55799 0 0 0 0 0 0 0 0
207982 0 1 1 0 0 0 0 0
373357 0 0 0 0 0 2 0 0
539347 0 0 1 0 0 0 1 0
23777 0 0 0 0 0 0 0 0
278398 4 0 0 8 10 5 0 0
578828 0 2 0 0 0 0 0 0
36647 0 0 0 0 0 0 0 0
573761 0 0 0 1 3 1 0 0
197095 0 0 0 0 0 0 1 0
336539 0 0 0 0 0 0 1 0
573607 0 0 28 0 0 1 0 1
2538 0 83 0 0 0 0 0 0
73076 1 0 0 0 0 0 1 1
257199 0 0 2 0 0 0 0 0
298252 0 0 0 0 0 0 0 5
522087 0 0 0 0 0 0 0 0
50120 0 0 0 0 0 0 0 0
537429 0 0 0 0 0 0 0 0
548838 7659 1 0 10 2 0 3 0
343119 0 0 0 7 15 4 0 0
362382 5 0 0 6 12 4 0 0
239490 0 0 1 0 0 1 0 0
183122 0 0 0 0 0 0 0 0
3581 0 0 1 0 0 0 0 0
368027 0 0 86 0 1 0 0 0
70528 0 0 0 0 0 0 0 0
97627 1 5 92 0 0 0 0 0
510817 0 0 0 0 0 5 424 10
86556 0 0 30 0 1 0 0 0
305437 0 0 0 0 0 0 1 0
114292 0 1 150 1 0 0 0 0
93610 0 0 1 0 0 0 0 0
548077 0 0 169 0 0 0 0 0
133568 1 6 3 2 1 0 0 0
223711 0 0 0 0 1 0 0 0
192952 0 0 0 0 0 0 4 4
333279 0 0 0 0 0 0 0 0
296956 0 0 0 0 0 0 0 0
115230 0 0 0 0 0 0 0 0
264558 0 0 0 0 0 0 0 0
261919 1 0 0 0 0 0 0 0
125536 0 1 0 1 1 1 0 0
244674 0 2 0 0 0 0 0 0
582971 0 0 0 0 0 0 0 0
361304 0 0 0 0 0 0 21 0
88335 0 0 722 1 0 0 0 0
198740 0 0 0 0 0 0 6 3
544430 0 0 0 0 0 0 0 0
269355 0 0 0 0 0 0 0 0
512598 0 0 0 0 0 0 0 0
182894 0 0 0 0 0 0 1 29
533078 0 0 0 0 0 0 0 0
516971 3 0 0 0 1 0 0 0
369734 0 0 253 0 0 0 0 0
222914 1 0 2 0 0 0 0 0
471308 1 0 0 0 0 0 0 0
583669 0 1 209 0 10 0 0 0
36624 0 0 0 0 0 0 0 0
13069 0 0 0 0 0 1 0 0
538805 0 0 3 0 0 0 0 0
193576 0 0 0 0 0 0 0 0
511119 0 0 0 0 5 37 0 0
522127 0 0 0 0 0 0 0 0
580835 7 0 0 0 0 0 0 0
579000 0 0 0 0 0 0 0 0
91532 1 0 0 0 0 0 0 0
470724 0 0 0 0 0 0 0 0
236430 0 0 0 0 0 0 0 0
322045 1 2 23 0 0 0 0 0
314793 0 0 0 0 0 1 0 0
272602 0 0 0 0 0 0 0 0
553285 0 0 0 0 2 8 0 0
228762 0 0 0 0 0 0 3 2
590547 0 0 1 0 0 0 0 0
454435 0 0 1 0 0 0 0 0
103639 0 0 0 1 4 5 0 0
269075 0 0 0 0 0 2 0 0
203691 0 0 0 0 0 0 1 0
229514 0 0 0 0 0 0 0 0
352654 0 78 4 1 0 1 0 0
248442 2 0 0 0 12 1 0 0
306610 0 0 0 12 0 0 0 0
292521 0 0 0 0 0 0 25 141
279083 0 0 0 0 0 0 1 0
333775 0 0 0 0 0 0 1 1
588604 0 2 5 0 0 0 0 0
572242 0 0 10 0 0 0 0 0
201720 0 0 0 0 0 0 0 0
544325 1 8 0 1 0 0 0 0
239291 0 0 0 0 1 0 0 0
345211 0 0 0 0 0 0 2 1
582509 0 0 0 0 37 26 0 1
241853 3 0 0 1 10 0 0 0
106480 0 0 0 0 0 0 0 0
205713 0 0 0 0 0 0 0 0
322112 0 0 0 0 0 0 0 0
63221 0 7 0 0 0 0 0 1
$taxtab
Taxonomy Table: [500 taxa by 7 taxonomic ranks]:
Kingdom Phylum Class
338272 "Bacteria" "Firmicutes" "Clostridia"
289855 "Bacteria" "Firmicutes" "Clostridia"
287759 "Bacteria" "Bacteroidetes" "Flavobacteria"
334839 "Bacteria" "Firmicutes" "Clostridia"
144065 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
18643 "Bacteria" "Proteobacteria" "Zetaproteobacteria"
218985 "Bacteria" "Chloroflexi" "SOGA31"
238997 "Bacteria" "Acidobacteria" "Solibacteres"
245893 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
131765 "Bacteria" "Bacteroidetes" "Bacteroidia"
536982 "Bacteria" "Chloroflexi" "Anaerolineae"
351629 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
321069 "Bacteria" "Actinobacteria" "Actinobacteria"
512157 "Bacteria" "Bacteroidetes" "Flavobacteria"
193230 "Bacteria" "Firmicutes" "Clostridia"
107461 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
329570 "Bacteria" "Planctomycetes" "Planctomycea"
35881 "Bacteria" "Bacteroidetes" "Flavobacteria"
260458 "Bacteria" "Thermi" "Deinococci"
279132 "Bacteria" "Bacteroidetes" "Flavobacteria"
548884 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
288119 "Bacteria" "Bacteroidetes" "Bacteroidia"
192899 "Bacteria" "Firmicutes" "Clostridia"
531589 "Bacteria" "Tenericutes" "Mollicutes"
90465 "Bacteria" "Spirochaetes" "Spirochaetes"
556145 "Bacteria" "Bacteroidetes" "Sphingobacteria"
542118 "Bacteria" "Actinobacteria" "Actinobacteria"
513763 "Bacteria" "Chloroflexi" "Dehalococcoidetes"
344513 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
141836 "Bacteria" "Proteobacteria" "Betaproteobacteria"
129783 "Bacteria" "Firmicutes" "Clostridia"
198528 "Bacteria" "Firmicutes" "Clostridia"
258229 "Bacteria" "Chlorobi" "SM1B09"
70461 "Bacteria" "Bacteroidetes" "Bacteroidia"
303295 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
313089 "Bacteria" "Firmicutes" "Clostridia"
254133 "Bacteria" "Armatimonadetes" "5B-18"
276351 "Bacteria" "Bacteroidetes" "Sphingobacteria"
275935 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
339472 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
508980 "Bacteria" "Nitrospirae" "Nitrospira"
175045 "Archaea" "Crenarchaeota" "Thaumarchaeota"
341275 "Bacteria" "Acidobacteria" NA
8389 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
571389 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
223948 "Bacteria" "Acidobacteria" "Chloracidobacteria"
239064 "Bacteria" "Proteobacteria" "Betaproteobacteria"
253651 "Bacteria" "Actinobacteria" "Actinobacteria"
236550 "Bacteria" "Proteobacteria" "Betaproteobacteria"
526081 "Bacteria" "Firmicutes" "Clostridia"
511558 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
26061 "Bacteria" "Actinobacteria" "Actinobacteria"
164557 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
71074 "Archaea" "Crenarchaeota" "Thaumarchaeota"
148678 "Bacteria" "Bacteroidetes" "Flavobacteria"
356589 "Bacteria" "Proteobacteria" "Betaproteobacteria"
16072 "Bacteria" "Firmicutes" "Clostridia"
210791 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
576850 "Bacteria" "Tenericutes" "Mollicutes"
12364 "Bacteria" "Actinobacteria" "Actinobacteria"
511687 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
247518 "Bacteria" "TM6" "SJA-4"
287763 "Bacteria" "Bacteroidetes" "Bacteroidia"
144921 "Bacteria" "Actinobacteria" "Actinobacteria"
215890 "Bacteria" "Firmicutes" "Clostridia"
511371 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
278955 "Bacteria" "Planctomycetes" "Planctomycea"
10857 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
509572 "Bacteria" "Chloroflexi" "Anaerolineae"
236118 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
100870 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
137557 "Bacteria" "Firmicutes" "Bacilli"
240686 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
153026 "Bacteria" "Bacteroidetes" "Sphingobacteria"
277196 "Bacteria" "Firmicutes" "Clostridia"
279590 "Bacteria" "Acidobacteria" "Acidobacteria"
470599 "Bacteria" "Firmicutes" "Bacilli"
550164 "Bacteria" "Bacteroidetes" "Sphingobacteria"
72610 "Bacteria" "Spirochaetes" "Spirochaetes"
550329 "Bacteria" "Cyanobacteria" "Chloroplast"
304950 "Bacteria" "Gemmatimonadetes" "Gemmatimonadetes"
574226 "Bacteria" "Actinobacteria" "Actinobacteria"
244496 "Bacteria" "Verrucomicrobia" "Spartobacteria"
89337 "Bacteria" "Actinobacteria" "Actinobacteria"
546723 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
212619 "Bacteria" "Firmicutes" "Clostridia"
137099 "Bacteria" "Verrucomicrobia" "Verrucomicrobiae"
312030 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
296377 "Bacteria" "Firmicutes" "Clostridia"
487725 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
470823 "Bacteria" "Bacteroidetes" "Bacteroidia"
546756 "Bacteria" "Proteobacteria" "Betaproteobacteria"
160337 "Bacteria" "Actinobacteria" "Actinobacteria"
556276 "Bacteria" "Bacteroidetes" "Sphingobacteria"
588981 "Bacteria" "Actinobacteria" "Actinobacteria"
306684 "Bacteria" "Bacteroidetes" "Sphingobacteria"
157866 "Bacteria" "Firmicutes" "Bacilli"
238929 "Bacteria" "Verrucomicrobia" "Verrucomicrobiae"
259028 "Bacteria" "Planctomycetes" "Planctomycea"
200064 "Bacteria" "Planctomycetes" "Planctomycea"
104310 "Bacteria" "Actinobacteria" "Actinobacteria"
152720 "Bacteria" "Actinobacteria" "Actinobacteria"
263307 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
346253 "Bacteria" "Firmicutes" "Clostridia"
8096 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
245050 "Bacteria" "Bacteroidetes" "Bacteroidia"
286030 "Bacteria" "Actinobacteria" "Actinobacteria"
100757 "Bacteria" "Actinobacteria" "Actinobacteria"
210865 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
261709 "Bacteria" "Actinobacteria" "Actinobacteria"
10517 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
113626 "Bacteria" "Acidobacteria" "Chloracidobacteria"
240591 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
88301 "Bacteria" "Proteobacteria" "Betaproteobacteria"
585355 "Bacteria" "Firmicutes" "Clostridia"
153762 "Archaea" "Crenarchaeota" "Thaumarchaeota"
330803 "Bacteria" "Bacteroidetes" "Flavobacteria"
526490 "Bacteria" "Firmicutes" "Clostridia"
258502 "Bacteria" "Firmicutes" "Clostridia"
70379 "Bacteria" "TM7" "TM7-3"
161544 "Bacteria" "Actinobacteria" "Actinobacteria"
181819 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
292556 "Bacteria" "Firmicutes" "Clostridia"
538794 "Bacteria" "NC10" "12-24"
341901 "Bacteria" "Actinobacteria" "Actinobacteria"
185339 "Bacteria" "Firmicutes" "Clostridia"
547752 "Bacteria" "Proteobacteria" "Betaproteobacteria"
510626 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
140805 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
565375 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
534516 "Bacteria" "Chloroflexi" "Thermomicrobia"
326644 "Bacteria" "Firmicutes" "Clostridia"
332464 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
578831 "Bacteria" "Bacteroidetes" "Sphingobacteria"
556231 "Bacteria" "Proteobacteria" "Betaproteobacteria"
108870 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
167215 "Bacteria" "Firmicutes" "Clostridia"
343453 "Bacteria" "Bacteroidetes" "Bacteroidia"
315848 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
257176 "Bacteria" "Actinobacteria" "Actinobacteria"
329327 "Bacteria" "Fibrobacteres" "Fibrobacteres"
292288 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
213873 "Bacteria" "Planctomycetes" "Planctomycea"
275402 "Bacteria" "Actinobacteria" "Actinobacteria"
563574 "Bacteria" "Firmicutes" "Clostridia"
533036 "Bacteria" "Planctomycetes" "Planctomycea"
591098 "Bacteria" "TM6" "SBRH58"
554003 "Bacteria" "Planctomycetes" "Phycisphaerae"
258006 "Bacteria" "Acidobacteria" "Chloracidobacteria"
254841 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
307569 "Bacteria" "Firmicutes" "Clostridia"
102209 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
114783 "Bacteria" "Proteobacteria" "Betaproteobacteria"
561842 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
204177 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
143463 "Bacteria" "GOUTA4" "RB384"
244840 "Bacteria" "Planctomycetes" "Planctomycea"
262115 "Bacteria" "SC4" NA
309328 "Bacteria" "Planctomycetes" "vadinHA49"
329074 "Bacteria" "Acidobacteria" "RB25"
570930 "Bacteria" "Firmicutes" "Clostridia"
1718 "Bacteria" "Acidobacteria" "iii1-8"
89763 "Bacteria" "Actinobacteria" "Actinobacteria"
212596 "Bacteria" "Acidobacteria" "Solibacteres"
100157 "Bacteria" "Actinobacteria" "Actinobacteria"
150577 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
291739 "Bacteria" "Bacteroidetes" "Bacteroidia"
540283 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
349780 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
166871 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
171551 "Bacteria" "Firmicutes" "Clostridia"
509511 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
329744 "Bacteria" "Actinobacteria" "Actinobacteria"
183985 "Bacteria" "Firmicutes" "Clostridia"
204462 "Bacteria" "Acidobacteria" "Solibacteres"
165257 "Bacteria" "Firmicutes" "Clostridia"
291710 "Bacteria" "Firmicutes" "Clostridia"
88682 "Bacteria" "Bacteroidetes" "Flavobacteria"
6697 "Bacteria" "Proteobacteria" "Betaproteobacteria"
136044 "Bacteria" "Firmicutes" "Clostridia"
557121 "Archaea" "Euryarchaeota" "Methanomicrobia"
143699 "Bacteria" "Proteobacteria" "Betaproteobacteria"
103157 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
157625 "Bacteria" "Firmicutes" "Clostridia"
65695 "Bacteria" "TM7" "TM7-1"
82548 "Bacteria" "Bacteroidetes" "Sphingobacteria"
234044 "Bacteria" "Proteobacteria" "Betaproteobacteria"
280233 "Bacteria" "Acidobacteria" NA
269778 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
589130 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
521924 "Bacteria" "Chloroflexi" "Anaerolineae"
165369 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
552779 "Bacteria" "Bacteroidetes" "Bacteroidia"
224569 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
471141 "Bacteria" "Actinobacteria" "Actinobacteria"
151439 "Bacteria" "Proteobacteria" "Betaproteobacteria"
9510 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
155970 "Bacteria" "Verrucomicrobia" "Verrucomicrobiae"
568881 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
113959 "Bacteria" "Acidobacteria" NA
542003 "Bacteria" "Bacteroidetes" "Flavobacteria"
589802 "Bacteria" "Acidobacteria" "Solibacteres"
196433 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
139752 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
350732 "Bacteria" "Firmicutes" "Clostridia"
298533 "Bacteria" "Bacteroidetes" "Bacteroidia"
31334 "Bacteria" "Firmicutes" "Bacilli"
139641 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
77467 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
593006 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
189485 "Bacteria" "Firmicutes" "Clostridia"
69664 "Bacteria" "Firmicutes" "Clostridia"
136740 "Bacteria" "Nitrospirae" "Nitrospira"
25695 "Bacteria" "Firmicutes" "Clostridia"
136925 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
26036 "Bacteria" "Firmicutes" "Clostridia"
514272 "Bacteria" "Firmicutes" "Clostridia"
588882 "Bacteria" "Acidobacteria" "Solibacteres"
101544 "Bacteria" "Proteobacteria" "Betaproteobacteria"
2783 "Bacteria" "Planctomycetes" "Planctomycea"
218035 "Bacteria" "Actinobacteria" "Actinobacteria"
581733 "Bacteria" "Acidobacteria" "RB25"
266208 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
469382 "Bacteria" "Bacteroidetes" "Flavobacteria"
144746 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
138816 "Bacteria" "Acidobacteria" "Acidobacteria"
577111 "Bacteria" "Nitrospirae" "Nitrospira"
114978 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
154106 "Bacteria" "Firmicutes" "Bacilli"
521453 "Bacteria" "Bacteroidetes" "Flavobacteria"
10660 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
162326 "Bacteria" "Bacteroidetes" "Sphingobacteria"
265749 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
583500 "Bacteria" "Firmicutes" "Clostridia"
273850 "Bacteria" "Firmicutes" "Clostridia"
218005 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
566717 "Bacteria" "Firmicutes" "Bacilli"
10113 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
304270 "Bacteria" "Chloroflexi" "Anaerolineae"
137403 "Bacteria" "Bacteroidetes" "Bacteroidia"
237003 "Bacteria" "Firmicutes" "Clostridia"
512616 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
339015 "Bacteria" "Proteobacteria" "Betaproteobacteria"
136780 "Bacteria" "Actinobacteria" "Actinobacteria"
349277 "Bacteria" "Actinobacteria" "Actinobacteria"
109792 "Bacteria" "Firmicutes" "Clostridia"
206278 "Bacteria" "Chloroflexi" "SOGA31"
159246 "Bacteria" "Cyanobacteria" "Synechococcophycideae"
350731 "Bacteria" "Firmicutes" "Clostridia"
588899 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
305967 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
591496 "Bacteria" "Firmicutes" "Clostridia"
233805 "Bacteria" "Bacteroidetes" "Bacteroidia"
536009 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
142784 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
295422 "Bacteria" "Proteobacteria" "Betaproteobacteria"
558838 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
113510 "Bacteria" "Bacteroidetes" "Sphingobacteria"
524765 "Bacteria" "Planctomycetes" "Planctomycea"
561594 "Bacteria" "Firmicutes" "Bacilli"
161340 "Bacteria" "Proteobacteria" "Betaproteobacteria"
313166 "Bacteria" "Bacteroidetes" "Bacteroidia"
321885 "Bacteria" "Planctomycetes" "Planctomycea"
163176 "Bacteria" "Proteobacteria" "Betaproteobacteria"
328739 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
268617 "Bacteria" "Bacteroidetes" "Sphingobacteria"
114029 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
561793 "Bacteria" "Chlorobi" "BSV19"
503327 "Bacteria" "Actinobacteria" "Actinobacteria"
172221 "Bacteria" "Chlorobi" "BSV19"
93537 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
261774 "Bacteria" "Actinobacteria" "Actinobacteria"
535000 "Bacteria" "OP8" "OP8_1"
541076 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
13662 "Bacteria" "Firmicutes" "Clostridia"
355680 "Bacteria" "Proteobacteria" "Betaproteobacteria"
292073 "Bacteria" "Firmicutes" "Clostridia"
202238 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
112263 "Bacteria" "Firmicutes" "Clostridia"
541602 "Bacteria" "Firmicutes" "Clostridia"
555446 "Bacteria" "Proteobacteria" "Betaproteobacteria"
78316 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
588740 "Bacteria" "Planctomycetes" "PW285"
107184 "Bacteria" "Proteobacteria" "Betaproteobacteria"
23870 "Bacteria" "Actinobacteria" "Actinobacteria"
167365 "Bacteria" "Firmicutes" "Clostridia"
184403 "Bacteria" "Firmicutes" "Clostridia"
5552 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
591182 "Bacteria" "SAR406" "AB16"
576085 "Bacteria" "Actinobacteria" "Actinobacteria"
207832 "Bacteria" "Firmicutes" "Bacilli"
206632 "Bacteria" "Verrucomicrobia" "Spartobacteria"
584265 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
291610 "Bacteria" "Firmicutes" "Clostridia"
239053 "Bacteria" "Firmicutes" "Clostridia"
111986 "Bacteria" "Acidobacteria" NA
166835 "Bacteria" "Proteobacteria" "Betaproteobacteria"
103589 "Bacteria" "Cyanobacteria" "Oscillatoriophycideae"
259270 "Bacteria" "Tenericutes" "Erysipelotrichi"
525569 "Archaea" "Crenarchaeota" "C2"
144091 "Bacteria" "WS3" "PRR-12"
583211 "Bacteria" "Bacteroidetes" "Bacteroidia"
112752 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
548184 "Bacteria" "Bacteroidetes" "Sphingobacteria"
193343 "Bacteria" "Firmicutes" "Clostridia"
565944 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
72374 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
200049 "Bacteria" "Planctomycetes" "Planctomycea"
134207 "Bacteria" "Firmicutes" "Clostridia"
546975 "Bacteria" "SPAM" "0319-6G9"
28512 "Bacteria" "Acidobacteria" "Acidobacteria"
141423 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
238279 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
570817 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
319724 "Bacteria" "Armatimonadetes" "Armatimonadia"
242989 "Bacteria" "Verrucomicrobia" "Verrucomicrobiae"
76933 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
128051 "Bacteria" "Actinobacteria" "Actinobacteria"
265094 "Bacteria" "Actinobacteria" "Actinobacteria"
13333 "Bacteria" "Actinobacteria" "Actinobacteria"
240228 "Bacteria" "Chloroflexi" "Ktedonobacteria"
320879 "Bacteria" "Actinobacteria" "Actinobacteria"
276703 "Bacteria" "Firmicutes" "Clostridia"
55727 "Bacteria" "Bacteroidetes" "Sphingobacteria"
162529 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
160135 "Bacteria" "Actinobacteria" "Actinobacteria"
262464 "Bacteria" "Bacteroidetes" "Flavobacteria"
567145 "Bacteria" "Planctomycetes" "Planctomycea"
342042 "Bacteria" "Bacteroidetes" "Bacteroidia"
542129 "Bacteria" "Bacteroidetes" "Bacteroidia"
214380 "Bacteria" "Firmicutes" "Clostridia"
254706 "Bacteria" "Acidobacteria" "Chloracidobacteria"
533173 "Bacteria" "Verrucomicrobia" "TP21"
258375 "Bacteria" "Firmicutes" "Clostridia"
527741 "Bacteria" "Firmicutes" "Clostridia"
329313 "Bacteria" "Firmicutes" "Clostridia"
342865 "Bacteria" "Bacteroidetes" NA
97508 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
250451 "Bacteria" "Acidobacteria" "Solibacteres"
274500 "Bacteria" "Proteobacteria" "Betaproteobacteria"
291764 "Bacteria" "Firmicutes" "Clostridia"
42014 "Bacteria" "Cyanobacteria" "Chloroplast"
257151 "Bacteria" "Bacteroidetes" "Sphingobacteria"
29284 "Bacteria" "Actinobacteria" "Actinobacteria"
519193 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
560734 "Bacteria" "Actinobacteria" "Actinobacteria"
568172 "Bacteria" "Tenericutes" "Mollicutes"
574961 "Bacteria" "Acidobacteria" "Solibacteres"
139920 "Bacteria" "Actinobacteria" "Actinobacteria"
334326 "Bacteria" "Proteobacteria" "Epsilonproteobacteria"
328963 "Bacteria" "Cyanobacteria" "Chloroplast"
335530 "Bacteria" "Bacteroidetes" "Bacteroidia"
139346 "Bacteria" "Acidobacteria" "Solibacteres"
554250 "Bacteria" "Bacteroidetes" "Bacteroidia"
513639 "Bacteria" "Planctomycetes" "Planctomycea"
542353 "Bacteria" "Planctomycetes" "Planctomycea"
237324 "Bacteria" "Firmicutes" "Clostridia"
1941 "Bacteria" "Bacteroidetes" "Bacteroidia"
237963 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
76142 "Bacteria" "Actinobacteria" "Actinobacteria"
267568 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
545503 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
114455 "Bacteria" "Bacteroidetes" "Bacteroidia"
261663 "Bacteria" "Chloroflexi" "Bljii12"
102382 "Bacteria" "Proteobacteria" "Betaproteobacteria"
278709 "Bacteria" "Chloroflexi" "Anaerolineae"
262658 "Bacteria" "Firmicutes" "Clostridia"
558480 "Bacteria" "Cyanobacteria" "Synechococcophycideae"
152931 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
68350 "Bacteria" "Firmicutes" "Clostridia"
259956 "Bacteria" "Gemmatimonadetes" "Gemmatimonadetes"
556462 "Bacteria" "Firmicutes" "Clostridia"
330861 "Bacteria" "Cyanobacteria" "Chloroplast"
234421 "Bacteria" "Firmicutes" "Clostridia"
535209 "Bacteria" "Firmicutes" "Clostridia"
136145 "Bacteria" "Cyanobacteria" "Synechococcophycideae"
588867 "Bacteria" "Bacteroidetes" "Sphingobacteria"
91919 "Bacteria" "Actinobacteria" "Actinobacteria"
470527 "Bacteria" "Firmicutes" "Bacilli"
320847 "Bacteria" "Bacteroidetes" "Bacteroidia"
215003 "Bacteria" "Actinobacteria" "Actinobacteria"
578409 "Bacteria" "Firmicutes" "Clostridia"
295754 "Bacteria" "Firmicutes" "Clostridia"
340730 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
272782 "Bacteria" "Acidobacteria" "Solibacteres"
272261 "Bacteria" "Bacteroidetes" "Bacteroidia"
134929 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
78203 "Bacteria" "Bacteroidetes" "Sphingobacteria"
248299 "Bacteria" "Actinobacteria" "Actinobacteria"
243335 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
394191 "Bacteria" "Proteobacteria" "Betaproteobacteria"
534609 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
235390 "Bacteria" "Proteobacteria" "Betaproteobacteria"
98457 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
179213 "Bacteria" "Planctomycetes" "Planctomycea"
262076 "Bacteria" "Bacteroidetes" "Sphingobacteria"
279470 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
560842 "Bacteria" "Firmicutes" "Clostridia"
247816 "Bacteria" "Cyanobacteria" "Nostocophycideae"
182728 "Bacteria" "Firmicutes" "Clostridia"
112749 "Bacteria" "Gemmatimonadetes" "Gemmatimonadetes"
362373 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
55799 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
207982 "Bacteria" "Proteobacteria" "Betaproteobacteria"
373357 "Bacteria" "Cyanobacteria" "4C0d-2"
539347 "Bacteria" "Bacteroidetes" "Bacteroidia"
23777 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
278398 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
578828 "Bacteria" "Proteobacteria" "Betaproteobacteria"
36647 "Bacteria" "Firmicutes" "Clostridia"
573761 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
197095 "Bacteria" "Firmicutes" "Clostridia"
336539 "Bacteria" "Firmicutes" "Clostridia"
573607 "Bacteria" "Acidobacteria" "Chloracidobacteria"
2538 "Bacteria" "Bacteroidetes" "Sphingobacteria"
73076 "Bacteria" "OP8" "OP8_1"
257199 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
298252 "Bacteria" "Firmicutes" "Clostridia"
522087 "Bacteria" "Bacteroidetes" "Bacteroidia"
50120 "Bacteria" "Firmicutes" "Clostridia"
537429 "Bacteria" "Bacteroidetes" NA
548838 "Bacteria" "Bacteroidetes" "Flavobacteria"
343119 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
362382 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
239490 "Bacteria" "Planctomycetes" "Planctomycea"
183122 "Bacteria" "Bacteroidetes" "Sphingobacteria"
3581 "Bacteria" "Fibrobacteres" "Fibrobacteres"
368027 "Bacteria" "Actinobacteria" "Actinobacteria"
70528 "Bacteria" "Firmicutes" "Bacilli"
97627 "Bacteria" "Proteobacteria" "Betaproteobacteria"
510817 "Bacteria" "Firmicutes" "Clostridia"
86556 "Bacteria" "Thermi" "Deinococci"
305437 "Bacteria" "Firmicutes" "Clostridia"
114292 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
93610 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
548077 "Bacteria" "Actinobacteria" "Actinobacteria"
133568 "Bacteria" "Proteobacteria" "Betaproteobacteria"
223711 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
192952 "Bacteria" "Firmicutes" "Clostridia"
333279 "Bacteria" "Firmicutes" "Clostridia"
296956 "Bacteria" "Armatimonadetes" "Armatimonadia"
115230 "Bacteria" "Firmicutes" "Bacilli"
264558 "Bacteria" "Cyanobacteria" "Chloroplast"
261919 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
125536 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
244674 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
582971 "Bacteria" "Nitrospirae" "Nitrospira"
361304 "Bacteria" "Bacteroidetes" "Bacteroidia"
88335 "Bacteria" "Actinobacteria" "Actinobacteria"
198740 "Bacteria" "Firmicutes" "Clostridia"
544430 "Bacteria" "Chlamydiae" "Chlamydiae"
269355 "Bacteria" "Bacteroidetes" "Sphingobacteria"
512598 "Bacteria" "Acidobacteria" NA
182894 "Bacteria" "Actinobacteria" "Actinobacteria"
533078 "Bacteria" "Chloroflexi" "Anaerolineae"
516971 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
369734 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
222914 "Bacteria" "Verrucomicrobia" "Verrucomicrobiae"
471308 "Bacteria" "Firmicutes" "Bacilli"
583669 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
36624 "Bacteria" "Firmicutes" "Clostridia"
13069 "Bacteria" "Actinobacteria" "Actinobacteria"
538805 "Bacteria" "Firmicutes" "Clostridia"
193576 "Bacteria" "Firmicutes" "Clostridia"
511119 "Bacteria" "Bacteroidetes" "Bacteroidia"
522127 "Bacteria" "TG3" "TG3-1"
580835 "Bacteria" "Bacteroidetes" "Flavobacteria"
579000 "Bacteria" "Firmicutes" "Clostridia"
91532 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
470724 "Bacteria" "Proteobacteria" "Betaproteobacteria"
236430 "Bacteria" "Bacteroidetes" "Sphingobacteria"
322045 "Bacteria" "Proteobacteria" "Betaproteobacteria"
314793 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
272602 "Bacteria" "Tenericutes" "Mollicutes"
553285 "Bacteria" "Acidobacteria" NA
228762 "Bacteria" "Firmicutes" "Clostridia"
590547 "Bacteria" "Firmicutes" "Clostridia"
454435 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
103639 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
269075 "Bacteria" "Planctomycetes" "Planctomycea"
203691 "Bacteria" "Actinobacteria" "Actinobacteria"
229514 "Bacteria" "Acidobacteria" "Solibacteres"
352654 "Bacteria" "Planctomycetes" "Planctomycea"
248442 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
306610 "Bacteria" "Proteobacteria" "Epsilonproteobacteria"
292521 "Bacteria" "Actinobacteria" "Actinobacteria"
279083 "Bacteria" "Cyanobacteria" "Synechococcophycideae"
333775 "Bacteria" "Firmicutes" "Clostridia"
588604 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
572242 "Bacteria" "Planctomycetes" "Planctomycea"
201720 "Bacteria" "Actinobacteria" NA
544325 "Bacteria" "Bacteroidetes" "Bacteroidia"
239291 "Bacteria" "Verrucomicrobia" "Verrucomicrobiae"
345211 "Bacteria" "Firmicutes" "Clostridia"
582509 "Bacteria" "Planctomycetes" "Planctomycea"
241853 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
106480 "Bacteria" "OP9" "JS1"
205713 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
322112 "Bacteria" "Firmicutes" "Clostridia"
63221 "Bacteria" "Nitrospirae" "Nitrospira"
Order Family
338272 "Clostridiales" "Ruminococcaceae"
289855 "Clostridiales" NA
287759 "Flavobacteriales" "Flavobacteriaceae"
334839 "Clostridiales" "Ruminococcaceae"
144065 "Rhodospirillales" "Acetobacteraceae"
18643 "Mariprofundales" "Mariprofundaceae"
218985 NA NA
238997 "Solibacterales" "Solibacteraceae"
245893 "Oceanospirillales" "125ds10"
131765 "Bacteroidales" "Porphyromonadaceae"
536982 "Anaerolineales" "Anaerolinaceae"
351629 "Xanthomonadales" "Xanthomonadaceae"
321069 "koll13" NA
512157 "Flavobacteriales" "Flavobacteriaceae"
193230 "Clostridiales" "Lachnospiraceae"
107461 "Rhizobiales" "Methylocystaceae"
329570 "Gemmatales" "Gemmataceae"
35881 "Flavobacteriales" "Flavobacteriaceae"
260458 "Deinococcales" "Deinococcaceae"
279132 "Flavobacteriales" "Flavobacteriaceae"
548884 "Rhodospirillales" "Rhodospirillaceae"
288119 "Bacteroidales" NA
192899 "Clostridiales" "Lachnospiraceae"
531589 "RF39" NA
90465 "Spirochaetales" "Spirochaetaceae"
556145 "Sphingobacteriales" "Cyclobacteriaceae"
542118 "Actinomycetales" "Micromonosporaceae"
513763 "NT-B4" NA
344513 "Rhodobacterales" "Hyphomonadaceae"
141836 "Burkholderiales" "Comamonadaceae"
129783 "Clostridiales" "Lachnospiraceae"
198528 "Clostridiales" "Lachnospiraceae"
258229 NA NA
70461 "Bacteroidales" "Porphyromonadaceae"
303295 "Myxococcales" "Haliangiaceae"
313089 "Clostridiales" NA
254133 NA NA
276351 "Sphingobacteriales" "Flammeovirgaceae"
275935 "Pseudomonadales" "Pseudomonadaceae"
339472 "Rhodospirillales" "Rhodospirillaceae"
508980 "Nitrospirales" "Thermodesulfovibrionaceae"
175045 "Cenarchaeales" "Cenarchaeaceae"
341275 NA NA
8389 "Pseudomonadales" "Moraxellaceae"
571389 "Syntrophobacterales" "Desulfobacteraceae"
223948 NA NA
239064 "Burkholderiales" "Comamonadaceae"
253651 "Actinomycetales" NA
236550 "Burkholderiales" "Oxalobacteraceae"
526081 "Clostridiales" "Lachnospiraceae"
511558 "Bdellovibrionales" "Bdellovibrionaceae"
26061 "Actinomycetales" "Actinomycetaceae"
164557 "Alteromonadales" "Alteromonadaceae"
71074 "Nitrososphaerales" "Nitrososphaeraceae"
148678 "Flavobacteriales" "Flavobacteriaceae"
356589 "Gallionellales" "Gallionellaceae"
16072 "Clostridiales" "Ruminococcaceae"
210791 "Sphingomonadales" "Sphingomonadaceae"
576850 "RF39" NA
12364 "Actinomycetales" "Intrasporangiaceae"
511687 "Sphingomonadales" "Sphingomonadaceae"
247518 NA NA
287763 "Bacteroidales" "Bacteroidaceae"
144921 "Actinomycetales" "Microbacteriaceae"
215890 "Clostridiales" "ClostridialesFamilyXIII.IncertaeSedis"
511371 "Legionellales" "Coxiellaceae"
278955 "Gemmatales" "Gemmataceae"
10857 "Syntrophobacterales" "Syntrophaceae"
509572 "SB-34" NA
236118 "NB1-j" "NB1-i"
100870 "Rhodobacterales" "Rhodobacteraceae"
137557 "Lactobacillales" "Enterococcaceae"
240686 "Rhodospirillales" "Rhodospirillaceae"
153026 "Sphingobacteriales" "Flexibacteraceae"
277196 "Clostridiales" "Lachnospiraceae"
279590 "Acidobacteriales" NA
470599 "Lactobacillales" "Lactobacillaceae"
550164 "Sphingobacteriales" "Flexibacteraceae"
72610 "Spirochaetales" "Spirochaetaceae"
550329 "Cryptophyta" NA
304950 NA NA
574226 "Actinomycetales" "Streptomycetaceae"
244496 "Spartobacteriales" "Spartobacteriaceae"
89337 "Actinomycetales" "Pseudonocardiaceae"
546723 "Legionellales" NA
212619 "Clostridiales" "Ruminococcaceae"
137099 "Verrucomicrobiales" NA
312030 "Oceanospirillales" "Alteromonadaceae"
296377 "Clostridiales" "Ruminococcaceae"
487725 "Sphingomonadales" "Sphingomonadaceae"
470823 "Bacteroidales" "Prevotellaceae"
546756 "Rhodocyclales" NA
160337 "Actinomycetales" "Frankiaceae"
556276 "Sphingobacteriales" NA
588981 "Actinomycetales" "Intrasporangiaceae"
306684 "Sphingobacteriales" NA
157866 "Bacillales" "Bacillaceae"
238929 "Verrucomicrobiales" NA
259028 "Pirellulales" NA
200064 "Pirellulales" NA
104310 "Actinomycetales" "Frankiaceae"
152720 "Actinomycetales" "Microbacteriaceae"
263307 "Rhodobacterales" "Rhodobacteraceae"
346253 "Clostridiales" NA
8096 "Methylococcales" NA
245050 "Bacteroidales" "Prevotellaceae"
286030 "Actinomycetales" "Nocardioidaceae"
100757 "Actinomycetales" "Thermomonosporaceae"
210865 "Rhodospirillales" "Rhodospirillaceae"
261709 "Actinomycetales" "Micrococcaceae"
10517 "Desulfovibrionales" "Desulfovibrionaceae"
113626 NA NA
240591 "Rhizobiales" "Phyllobacteriaceae"
88301 "Burkholderiales" "Oxalobacteraceae"
585355 "Clostridiales" "Peptococcaceae"
153762 "Cenarchaeales" "Cenarchaeaceae"
330803 "Flavobacteriales" "Flavobacteriaceae"
526490 "Clostridiales" NA
258502 "Clostridiales" "Dehalobacteriaceae"
70379 "EW055" NA
161544 "Acidimicrobiales" NA
181819 "Pseudomonadales" "Pseudomonadaceae"
292556 "Clostridiales" "Lachnospiraceae"
538794 "JH-WHS47" NA
341901 "Actinomycetales" "Nocardioidaceae"
185339 "Clostridiales" NA
547752 "Burkholderiales" "Burkholderiaceae"
510626 "Chromatiales" NA
140805 "Alteromonadales" "Pseudoalteromonadaceae"
565375 "Myxococcales" "Haliangiaceae"
534516 "HN1-15" NA
326644 "Clostridiales" "Lachnospiraceae"
332464 "Myxococcales" "Haliangiaceae"
578831 "Sphingobacteriales" NA
556231 "Rhodocyclales" NA
108870 "Rhizobiales" "Methylobacteriaceae"
167215 "Clostridiales" "Clostridiaceae"
343453 "Bacteroidales" "Prevotellaceae"
315848 "Oceanospirillales" "HTCC2188"
257176 "Acidimicrobiales" "EB1017"
329327 "Fibrobacterales" "Fibrobacteraceae"
292288 "Chromatiales" NA
213873 "Gemmatales" "Isosphaeraceae"
275402 "koll13" NA
563574 "Clostridiales" "Ruminococcaceae"
533036 "Pirellulales" NA
591098 NA NA
554003 NA NA
258006 NA NA
254841 "Sphingomonadales" "Sphingomonadaceae"
307569 "Clostridiales" "Lachnospiraceae"
102209 "Xanthomonadales" "Xanthomonadaceae"
114783 "Burkholderiales" NA
561842 NA NA
204177 "Myxococcales" "Haliangiaceae"
143463 NA NA
244840 "Pirellulales" "Pirellulaceae"
262115 NA NA
309328 NA NA
329074 NA NA
570930 "Clostridiales" NA
1718 "DS-18" NA
89763 "Solirubrobacterales" NA
212596 "Solibacterales" "Solibacteraceae"
100157 "Acidimicrobiales" "EB1017"
150577 "Rhizobiales" NA
291739 "Bacteroidales" NA
540283 NA NA
349780 "Chromatiales" "Ectothiorhodospiraceae"
166871 "Chromatiales" NA
171551 "Clostridiales" "Ruminococcaceae"
509511 "Rhodospirillales" "Acetobacteraceae"
329744 "Actinomycetales" "ACK-M1"
183985 "Clostridiales" "Ruminococcaceae"
204462 "Solibacterales" "Solibacteraceae"
165257 "Clostridiales" "Ruminococcaceae"
291710 "Clostridiales" "Lachnospiraceae"
88682 "Flavobacteriales" "Flavobacteriaceae"
6697 "Rhodocyclales" "Rhodocyclaceae"
136044 "Clostridiales" "Lachnospiraceae"
557121 "Methanomicrobiales" NA
143699 "Burkholderiales" NA
103157 "Oceanospirillales" "Alcanivoracaceae"
157625 "Clostridiales" NA
65695 NA NA
82548 "Sphingobacteriales" "Cyclobacteriaceae"
234044 "Burkholderiales" "Alcaligenaceae"
280233 NA NA
269778 "Oceanospirillales" "Alteromonadaceae"
589130 NA NA
521924 "SB-34" NA
165369 "NB1-j" NA
552779 "Bacteroidales" NA
224569 "Enterobacteriales" "Enterobacteriaceae"
471141 "Actinomycetales" "Micrococcaceae"
151439 NA NA
9510 "Pasteurellales" "Pasteurellaceae"
155970 "Verrucomicrobiales" NA
568881 "Syntrophobacterales" "Syntrophobacteraceae"
113959 NA NA
542003 "Flavobacteriales" "Flavobacteriaceae"
589802 "Solibacterales" "Solibacteraceae"
196433 "Vibrionales" "Vibrionaceae"
139752 "Oceanospirillales" "HTCC2188"
350732 "Clostridiales" "Lachnospiraceae"
298533 "Bacteroidales" "Prevotellaceae"
31334 "Bacillales" "Bacillaceae"
139641 "Oceanospirillales" "Halomonadaceae"
77467 "Syntrophobacterales" NA
593006 "Chromatiales" "Sinobacteraceae"
189485 "Clostridiales" "Lachnospiraceae"
69664 "Clostridiales" NA
136740 "Nitrospirales" "Nitrospiraceae"
25695 "Clostridiales" "Ruminococcaceae"
136925 "NB1-j" "MND4"
26036 "Clostridiales" "Peptococcaceae"
514272 "Clostridiales" "Lachnospiraceae"
588882 "Solibacterales" "Solibacteraceae"
101544 "Methylophilales" "Methylophilaceae"
2783 "Pirellulales" NA
218035 "Actinomycetales" "Microbacteriaceae"
581733 NA NA
266208 "Rhodospirillales" "Acetobacteraceae"
469382 "Flavobacteriales" "Flavobacteriaceae"
144746 "Oceanospirillales" "OM60"
138816 "Acidobacteriales" NA
577111 "Nitrospirales" "Thermodesulfovibrionaceae"
114978 "Rhizobiales" "Hyphomicrobiaceae"
154106 "Gemellales" "Gemellaceae"
521453 "Flavobacteriales" "Flavobacteriaceae"
10660 "Desulfuromonadales" "Desulfuromonadaceae"
162326 "Sphingobacteriales" NA
265749 "Rhodobacterales" "Rhodobacteraceae"
583500 "Clostridiales" "Lachnospiraceae"
273850 "Clostridiales" "Ruminococcaceae"
218005 "Bdellovibrionales" "Bacteriovoracaceae"
566717 "Bacillales" "Bacillaceae"
10113 "Enterobacteriales" "Enterobacteriaceae"
304270 "S0208" NA
137403 "Bacteroidales" NA
237003 "Clostridiales" "Ruminococcaceae"
512616 "Chromatiales" "Sinobacteraceae"
339015 "Burkholderiales" NA
136780 "MC47" NA
349277 "Actinomycetales" "Microbacteriaceae"
109792 "Clostridiales" NA
206278 NA NA
159246 "Pseudanabaenales" "Pseudanabaenaceae"
350731 "Clostridiales" "Ruminococcaceae"
588899 "Rhodospirillales" "Rhodospirillaceae"
305967 "Chromatiales" NA
591496 "Clostridiales" "Clostridiaceae"
233805 "Bacteroidales" "Rikenellaceae"
536009 "Oceanospirillales" "Alteromonadaceae"
142784 "Methylococcales" "Methylococcaceae"
295422 "Burkholderiales" "Alcaligenaceae"
558838 "Pseudomonadales" "Pseudomonadaceae"
113510 "Sphingobacteriales" "Flammeovirgaceae"
524765 "Pirellulales" NA
561594 "Lactobacillales" "Enterococcaceae"
161340 "Burkholderiales" "Comamonadaceae"
313166 "Bacteroidales" "Bacteroidaceae"
321885 "Gemmatales" "Gemmataceae"
163176 "Rhodocyclales" "Rhodocyclaceae"
328739 "Rhodospirillales" "Rhodospirillaceae"
268617 "Sphingobacteriales" NA
114029 NA NA
561793 NA NA
503327 "Actinomycetales" "Corynebacteriaceae"
172221 NA NA
93537 "Rhodobacterales" "Rhodobacteraceae"
261774 "Actinomycetales" "Corynebacteriaceae"
535000 "SHA-124" NA
541076 "Desulfuromonadales" "Geobacteraceae"
13662 "Clostridiales" "Peptococcaceae"
355680 "Burkholderiales" "Burkholderiaceae"
292073 "Clostridiales" "Lachnospiraceae"
202238 "Xanthomonadales" "Xanthomonadaceae"
112263 "Clostridiales" NA
541602 "Clostridiales" "Lachnospiraceae"
555446 "Rhodocyclales" NA
78316 "Rhodospirillales" "Rhodospirillaceae"
588740 NA NA
107184 "Rhodocyclales" "Rhodocyclaceae"
23870 "Actinomycetales" "Streptomycetaceae"
167365 "Clostridiales" "Lachnospiraceae"
184403 "Clostridiales" "Lachnospiraceae"
5552 "Caulobacterales" "Caulobacteraceae"
591182 "Arctic96B-7" "A714017"
576085 "Actinomycetales" "Thermomonosporaceae"
207832 "Bacillales" "Bacillaceae"
206632 "Spartobacteriales" "Spartobacteriaceae"
584265 NA NA
291610 "Clostridiales" "Ruminococcaceae"
239053 "Clostridiales" "Lachnospiraceae"
111986 NA NA
166835 "Burkholderiales" "Burkholderiaceae"
103589 "Oscillatoriales" NA
259270 "Erysipelotrichales" "Erysipelotrichaceae"
525569 "pGrfC26" NA
144091 "Sediment-1" "PRR-10"
583211 "Bacteroidales" NA
112752 "Rhodospirillales" "Acetobacteraceae"
548184 "Sphingobacteriales" "Sphingobacteriaceae"
193343 "Clostridiales" "Lachnospiraceae"
565944 "Chromatiales" NA
72374 "Enterobacteriales" "Enterobacteriaceae"
200049 "Pirellulales" NA
134207 "Clostridiales" "Veillonellaceae"
546975 NA NA
28512 "Acidobacteriales" NA
141423 "Methylococcales" "Crenotrichaceae"
238279 "Legionellales" "Legionellaceae"
570817 "Sphingomonadales" "Sphingomonadaceae"
319724 "Armatimonadales" "WD294"
242989 "Verrucomicrobiales" "Verrucomicrobiasubdivision3"
76933 "Myxococcales" "Haliangiaceae"
128051 "Actinomycetales" "Actinospicaceae"
265094 "Actinomycetales" "Micromonosporaceae"
13333 "Actinomycetales" "Williamsiaceae"
240228 NA NA
320879 "Actinomycetales" "Corynebacteriaceae"
276703 "Clostridiales" "Lachnospiraceae"
55727 "Sphingobacteriales" NA
162529 "Syntrophobacterales" "Desulfobacteraceae"
160135 "Actinomycetales" "Streptomycetaceae"
262464 "Flavobacteriales" "Flavobacteriaceae"
567145 "Gemmatales" "Gemmataceae"
342042 "Bacteroidales" "Marinilabiaceae"
542129 "Bacteroidales" NA
214380 "Clostridiales" "Ruminococcaceae"
254706 NA NA
533173 NA NA
258375 "Clostridiales" "Veillonellaceae"
527741 "Clostridiales" "Ruminococcaceae"
329313 "Clostridiales" "Lachnospiraceae"
342865 NA NA
97508 "Oceanospirillales" "OM60"
250451 "Solibacterales" "Solibacteraceae"
274500 "Hydrogenophilales" "Hydrogenophilaceae"
291764 "Clostridiales" "Lachnospiraceae"
42014 "Streptophyta" NA
257151 "Sphingobacteriales" NA
29284 "Actinomycetales" "Intrasporangiaceae"
519193 "Rhizobiales" "Phyllobacteriaceae"
560734 "Actinomycetales" NA
568172 "Mycoplasmatales" "Mycoplasmataceae"
574961 "Solibacterales" "Solibacteraceae"
139920 "Actinomycetales" "Dermacoccaceae"
334326 "Campylobacterales" "Campylobacteraceae"
328963 "Stramenopiles" NA
335530 "Bacteroidales" "Rikenellaceae"
139346 "Solibacterales" "Solibacteraceae"
554250 "Bacteroidales" NA
513639 "Pirellulales" "Pirellulaceae"
542353 "Pirellulales" NA
237324 "Clostridiales" "Lachnospiraceae"
1941 "Bacteroidales" "Porphyromonadaceae"
237963 "Myxococcales" NA
76142 "Actinomycetales" "Nakamurellaceae"
267568 "Oceanospirillales" NA
545503 "Rhodobacterales" "Rhodobacteraceae"
114455 "Bacteroidales" "Porphyromonadaceae"
261663 "AKYG885" "Dolo_23"
102382 "Burkholderiales" "Oxalobacteraceae"
278709 "envOPS12" NA
262658 "Clostridiales" "Ruminococcaceae"
558480 "Synechococcales" "Synechococcaceae"
152931 "Rhodospirillales" "Rhodospirillaceae"
68350 "Clostridiales" NA
259956 NA NA
556462 "Clostridiales" "Ruminococcaceae"
330861 "Streptophyta" NA
234421 "Clostridiales" "Lachnospiraceae"
535209 "Clostridiales" "Lachnospiraceae"
136145 "Synechococcales" "Chamaesiphonaceae"
588867 "Sphingobacteriales" "Flexibacteraceae"
91919 "Actinomycetales" "Nocardiopsaceae"
470527 "Lactobacillales" "Lactobacillaceae"
320847 "Bacteroidales" NA
215003 "Acidimicrobiales" NA
578409 "Clostridiales" "Clostridiaceae"
295754 "Clostridiales" "Lachnospiraceae"
340730 "Rhodospirillales" "Rhodospirillaceae"
272782 "Solibacterales" "Solibacteraceae"
272261 "Bacteroidales" NA
134929 "Syntrophobacterales" "Desulfobacteraceae"
78203 "Sphingobacteriales" "Sphingobacteriaceae"
248299 "MC47" NA
243335 "Rhodobacterales" "Rhodobacteraceae"
394191 "Neisseriales" "Neisseriaceae"
534609 "Rhodobacterales" "Rhodobacteraceae"
235390 "Burkholderiales" "Comamonadaceae"
98457 "Rhizobiales" "Hyphomicrobiaceae"
179213 "Pirellulales" NA
262076 "Sphingobacteriales" "Saprospiraceae"
279470 "Legionellales" "Coxiellaceae"
560842 "Clostridiales" "ClostridialesFamilyXI.IncertaeSedis"
247816 "Nostocales" "Nostocaceae"
182728 "Clostridiales" "Lachnospiraceae"
112749 NA NA
362373 "Oceanospirillales" "Halomonadaceae"
55799 "Enterobacteriales" "Enterobacteriaceae"
207982 NA NA
373357 "YS2" NA
539347 "Bacteroidales" "Prevotellaceae"
23777 "Desulfovibrionales" "Desulfomicrobiaceae"
278398 "Oceanospirillales" "OM60"
578828 "Burkholderiales" "Comamonadaceae"
36647 "Clostridiales" "Lachnospiraceae"
573761 "Oceanospirillales" "Alteromonadaceae"
197095 "Clostridiales" "Ruminococcaceae"
336539 "Clostridiales" "Lachnospiraceae"
573607 NA NA
2538 "Sphingobacteriales" "Saprospiraceae"
73076 "SHA-124" NA
257199 "Legionellales" "Legionellaceae"
298252 "Clostridiales" "Lachnospiraceae"
522087 "Bacteroidales" "Porphyromonadaceae"
50120 "Clostridiales" "Clostridiaceae"
537429 NA NA
548838 NA NA
343119 NA NA
362382 "Thiotrichales" "Francisellaceae"
239490 "Gemmatales" "Gemmataceae"
183122 "Sphingobacteriales" "Cyclobacteriaceae"
3581 "Fibrobacterales" "Fibrobacteraceae"
368027 "MC47" NA
70528 "Bacillales" "Bacillaceae"
97627 "Burkholderiales" "Comamonadaceae"
510817 "Clostridiales" "Ruminococcaceae"
86556 "Deinococcales" "Deinococcaceae"
305437 "Clostridiales" "Lachnospiraceae"
114292 "Sphingomonadales" "Sphingomonadaceae"
93610 "Xanthomonadales" "Xanthomonadaceae"
548077 "Acidimicrobiales" NA
133568 "Burkholderiales" "Oxalobacteraceae"
223711 "Rhizobiales" "Hyphomicrobiaceae"
192952 "Clostridiales" "Lachnospiraceae"
333279 "Clostridiales" "Lachnospiraceae"
296956 "Armatimonadales" "Armatimonadaceae"
115230 "Lactobacillales" "Enterococcaceae"
264558 "Streptophyta" NA
261919 NA NA
125536 "Oceanospirillales" "SUP05"
244674 "Myxococcales" NA
582971 "Nitrospirales" "Thermodesulfovibrionaceae"
361304 "Bacteroidales" "Bacteroidaceae"
88335 "Solirubrobacterales" NA
198740 "Clostridiales" "Lachnospiraceae"
544430 "Chlamydiales" "Parachlamydiaceae"
269355 "Sphingobacteriales" "Flexibacteraceae"
512598 NA NA
182894 "Coriobacteriales" "Coriobacteriaceae"
533078 "Caldilineales" "Caldilineaceae"
516971 "Oceanospirillales" "Oceanospirillaceae"
369734 "Rhodospirillales" "Rhodospirillaceae"
222914 "Verrucomicrobiales" "Verrucomicrobiasubdivision3"
471308 "Lactobacillales" "Lactobacillaceae"
583669 "Oceanospirillales" "211ds20"
36624 "Clostridiales" "Lachnospiraceae"
13069 "Actinomycetales" "Mycobacteriaceae"
538805 "Clostridiales" "Ruminococcaceae"
193576 "Clostridiales" "Lachnospiraceae"
511119 "Bacteroidales" NA
522127 "GN09" NA
580835 "Flavobacteriales" "Flavobacteriaceae"
579000 "Clostridiales" "Ruminococcaceae"
91532 "Rhodospirillales" "Rhodospirillaceae"
470724 "Neisseriales" "Neisseriaceae"
236430 "Sphingobacteriales" NA
322045 "Burkholderiales" "Oxalobacteraceae"
314793 "Syntrophobacterales" "Desulfobacteraceae"
272602 "RF39" NA
553285 NA NA
228762 "Clostridiales" "Lachnospiraceae"
590547 "Clostridiales" "Ruminococcaceae"
454435 "Legionellales" "Legionellaceae"
103639 "Syntrophobacterales" "Desulfobacteraceae"
269075 "Pirellulales" NA
203691 "Bifidobacteriales" "Bifidobacteriaceae"
229514 "Solibacterales" "Solibacteraceae"
352654 "Pirellulales" NA
248442 "Oceanospirillales" "OM60"
306610 "Campylobacterales" "Helicobacteraceae"
292521 "Bifidobacteriales" "Bifidobacteriaceae"
279083 "Pseudanabaenales" "Pseudanabaenaceae"
333775 "Clostridiales" "Lachnospiraceae"
588604 "Rhodospirillales" "Rhodospirillaceae"
572242 "Gemmatales" "Gemmataceae"
201720 NA NA
544325 "Bacteroidales" NA
239291 "Verrucomicrobiales" "Verrucomicrobiaceae"
345211 "Clostridiales" "Lachnospiraceae"
582509 "Pirellulales" NA
241853 "Bdellovibrionales" "Bacteriovoracaceae"
106480 "SB-45" NA
205713 "Rhizobiales" "Rhizobiaceae"
322112 "Clostridiales" NA
63221 "Nitrospirales" "Thermodesulfovibrionaceae"
Genus Species
338272 NA NA
289855 NA NA
287759 NA NA
334839 NA NA
144065 NA NA
18643 "Mariprofundus" NA
218985 NA NA
238997 "CandidatusSolibacter" NA
245893 NA NA
131765 "Porphyromonas" NA
536982 "T78" NA
351629 "Lysobacter" NA
321069 NA NA
512157 NA NA
193230 NA NA
107461 NA NA
329570 NA NA
35881 NA NA
260458 "Deinococcus" NA
279132 NA NA
548884 NA NA
288119 NA NA
192899 "Blautia" NA
531589 NA NA
90465 "Spirochaeta" "Spirochaetaaurantia"
556145 "Algoriphagus" NA
542118 NA NA
513763 NA NA
344513 NA NA
141836 NA NA
129783 NA NA
198528 "Clostridium" NA
258229 NA NA
70461 NA NA
303295 NA NA
313089 NA NA
254133 NA NA
276351 NA NA
275935 "Pseudomonas" "Pseudomonasmendocina"
339472 NA NA
508980 "LCP-6" NA
175045 "Nitrosopumilus" NA
341275 NA NA
8389 "Acinetobacter" "Acinetobacterjohnsonii"
571389 NA NA
223948 NA NA
239064 "Brachymonas" NA
253651 NA NA
236550 "Massilia" "Massiliatimonae"
526081 "Oribacterium" NA
511558 "Bdellovibrio" NA
26061 "Actinomyces" NA
164557 "Glaciecola" NA
71074 "CandidatusNitrososphaera" "SCA1145"
148678 NA NA
356589 "Gallionella" NA
16072 NA NA
210791 "Sphingobium" NA
576850 NA NA
12364 "Terracoccus" NA
511687 "Novosphingobium" "Novosphingobiumstygium"
247518 NA NA
287763 "Bacteroides" NA
144921 "Microcella" NA
215890 "Anaerovorax" NA
511371 NA NA
278955 "Gemmata" NA
10857 "Syntrophus" "Syntrophussp."
509572 NA NA
236118 NA NA
100870 "Loktanella" NA
137557 "Enterococcus" "Enterococcusinusitatus"
240686 "Novispirillum" "Novospirillumitersonii"
153026 "Runella" NA
277196 NA NA
279590 NA NA
470599 "Lactobacillus" "Lactobacillusiners"
550164 "Cytophaga" NA
72610 "Treponema" NA
550329 NA NA
304950 NA NA
574226 "Streptacidiphilus" NA
244496 "CandidatusXiphinematobacter" NA
89337 "Actinoalloteichus" NA
546723 NA NA
212619 NA NA
137099 NA NA
312030 "HTCC2207" NA
296377 NA NA
487725 "Sphingomonas" NA
470823 "Prevotella" NA
546756 NA NA
160337 NA NA
556276 NA NA
588981 "Terracoccus" NA
306684 NA NA
157866 "Bacillus" NA
238929 NA NA
259028 NA NA
200064 NA NA
104310 NA NA
152720 "Microbacterium" NA
263307 NA NA
346253 NA NA
8096 NA NA
245050 "Prevotella" NA
286030 "Nocardioides" NA
100757 "Actinomadura" "Actinomadurarubrobrunea"
210865 NA NA
261709 "Arthrobacter" NA
10517 "Bilophila" "Bilophilawadsworthia"
113626 NA NA
240591 NA NA
88301 "Massilia" "Massiliatimonae"
585355 NA NA
153762 "Cenarchaeum" NA
330803 NA NA
526490 NA NA
258502 "Dehalobacterium" NA
70379 NA NA
161544 NA NA
181819 "Pseudomonas" NA
292556 NA NA
538794 NA NA
341901 NA NA
185339 NA NA
547752 "Burkholderia" NA
510626 NA NA
140805 "Pseudoalteromonas" NA
565375 NA NA
534516 NA NA
326644 "Clostridium" NA
332464 NA NA
578831 "Niabella" NA
556231 NA NA
108870 "Methylobacterium" NA
167215 NA NA
343453 "Prevotella" NA
315848 "HTCC" NA
257176 NA NA
329327 "Fibrobacter" "Fibrobactersuccinogenes"
292288 NA NA
213873 NA NA
275402 NA NA
563574 "Ruminococcus" "Ruminococcusflavefaciens"
533036 NA NA
591098 NA NA
554003 NA NA
258006 NA NA
254841 "Sphingomonas" NA
307569 NA NA
102209 NA NA
114783 "Rubrivivax" "Rubrivivaxgelatinosus"
561842 NA NA
204177 NA NA
143463 NA NA
244840 "Pirellula" NA
262115 NA NA
309328 NA NA
329074 NA NA
570930 NA NA
1718 NA NA
89763 NA NA
212596 "CandidatusSolibacter" NA
100157 NA NA
150577 NA NA
291739 NA NA
540283 NA NA
349780 NA NA
166871 NA NA
171551 "Faecalibacterium" "Faecalibacteriumprausnitzii"
509511 NA NA
329744 NA NA
183985 NA NA
204462 "CandidatusSolibacter" NA
165257 NA NA
291710 "Epulopiscium" NA
88682 NA NA
6697 "Azonexus" "Azonexusfungiphilus"
136044 "Eubacterium" NA
557121 "Methanosphaerula" "Methanosphaerulapalustris"
143699 NA NA
103157 NA NA
157625 NA NA
65695 NA NA
82548 "Algoriphagus" NA
234044 "Achromobacter" NA
280233 NA NA
269778 "Spongiibacter" NA
589130 NA NA
521924 NA NA
165369 NA NA
552779 NA NA
224569 NA NA
471141 "Rothia" "Rothiamucilaginosa"
151439 NA NA
9510 NA NA
155970 NA NA
568881 NA NA
113959 NA NA
542003 "Tenacibaculum" NA
589802 "CandidatusSolibacter" NA
196433 "Vibrio" NA
139752 NA NA
350732 NA NA
298533 "Prevotella" NA
31334 NA NA
139641 "Halomonas" NA
77467 NA NA
593006 NA NA
189485 "Coprococcus" NA
69664 NA NA
136740 "Nitrospira" NA
25695 NA NA
136925 NA NA
26036 "Desulfosporosinus" "Desulfosporosinusmeridiei"
514272 "Coprococcus" NA
588882 "CandidatusSolibacter" NA
101544 NA NA
2783 "Rhodopirellula" NA
218035 NA NA
581733 NA NA
266208 "Acidocella" NA
469382 "Flavobacterium" NA
144746 NA NA
138816 NA NA
577111 "LCP-6" NA
114978 "Hyphomicrobium" NA
154106 "Gemella" "Gemellasanguinis"
521453 NA NA
10660 "Desulfuromusa" NA
162326 NA NA
265749 NA NA
583500 "Clostridium" NA
273850 NA NA
218005 NA NA
566717 "Bacillus" NA
10113 NA NA
304270 NA NA
137403 NA NA
237003 "Eubacterium" NA
512616 NA NA
339015 "Tepidimonas" NA
136780 NA NA
349277 "Microbacterium" "Microbacteriumaurum"
109792 NA NA
206278 NA NA
159246 "Leptolyngbya" NA
350731 NA NA
588899 NA NA
305967 NA NA
591496 "Clostridium" NA
233805 NA NA
536009 "Marinobacter" "Marinobactermobilis"
142784 "Methylomonas" NA
295422 "Sutterella" NA
558838 "Pseudomonas" NA
113510 NA NA
524765 NA NA
561594 "Enterococcus" "Enterococcusasini"
161340 "Rhodoferax" NA
313166 "Bacteroides" NA
321885 NA NA
163176 "Methyloversatilis" NA
328739 NA NA
268617 NA NA
114029 NA NA
561793 NA NA
503327 "Corynebacterium" NA
172221 NA NA
93537 "Loktanella" "Loktanellavestfoldensis"
261774 "Corynebacterium" NA
535000 NA NA
541076 "Geobacter" NA
13662 "Pelotomaculum" NA
355680 NA NA
292073 "Ruminococcus" NA
202238 "Stenotrophomonas" NA
112263 NA NA
541602 "Roseburia" NA
555446 NA NA
78316 "Magnetospirillum" "Magnetospirillumsp."
588740 NA NA
107184 "Methyloversatilis" NA
23870 "Streptomyces" NA
167365 "Clostridium" NA
184403 NA NA
5552 "Phenylobacterium" NA
591182 "ZA3312c" NA
576085 "Actinomadura" "Actinomaduravinacea"
207832 NA NA
206632 "MC18" NA
584265 NA NA
291610 NA NA
239053 "Clostridium" NA
111986 NA NA
166835 "Burkholderia" NA
103589 NA NA
259270 "p-75-a5" NA
525569 NA NA
144091 NA NA
583211 NA NA
112752 NA NA
548184 NA NA
193343 "Roseburia" "Eubacteriumrectale"
565944 NA NA
72374 "Buttiauxella" "Buttiauxellaagrestis"
200049 NA NA
134207 "Thermosinus" NA
546975 NA NA
28512 NA NA
141423 "Crenothrix" NA
238279 "Tatlockia" NA
570817 "Sphingomonas" NA
319724 NA NA
242989 NA NA
76933 NA NA
128051 NA NA
265094 "Micromonospora" "Micromonosporacarbonacea"
13333 "Williamsia" NA
240228 NA NA
320879 NA NA
276703 "Eubacterium" NA
55727 NA NA
162529 NA NA
160135 "Streptomyces" NA
262464 "Chryseobacterium" NA
567145 NA NA
342042 NA NA
542129 NA NA
214380 NA NA
254706 NA NA
533173 NA NA
258375 "Dialister" NA
527741 "Faecalibacterium" NA
329313 "Roseburia" NA
342865 "CandidatusAmoebophilus" "CandidatusAmoebophilusasiaticus"
97508 NA NA
250451 "CandidatusSolibacter" NA
274500 "Thiobacillus" NA
291764 NA NA
42014 NA NA
257151 NA NA
29284 "Tetrasphaera" "Tetrasphaerajenkinsii"
519193 NA NA
560734 NA NA
568172 NA NA
574961 "CandidatusSolibacter" NA
139920 "Dermacoccus" NA
334326 "Arcobacter" NA
328963 NA NA
335530 "Alistipes" NA
139346 "CandidatusSolibacter" NA
554250 NA NA
513639 "A17" NA
542353 "Rhodopirellula" NA
237324 "Clostridium" NA
1941 "Porphyromonas" NA
237963 NA NA
76142 NA NA
267568 NA NA
545503 NA NA
114455 "Dysgonomonas" NA
261663 NA NA
102382 "Massilia" "Massiliatimonae"
278709 NA NA
262658 NA NA
558480 "Prochlorococcus" NA
152931 NA NA
68350 NA NA
259956 NA NA
556462 NA NA
330861 NA NA
234421 "Ruminococcus" NA
535209 NA NA
136145 NA "Chamaesiphonsubglobosus"
588867 NA NA
91919 "Nocardiopsis" NA
470527 "Lactobacillus" NA
320847 NA NA
215003 NA NA
578409 "Clostridium" NA
295754 "Clostridium" NA
340730 NA NA
272782 "CandidatusSolibacter" NA
272261 NA NA
134929 NA NA
78203 NA NA
248299 NA NA
243335 "Loktanella" NA
394191 "Simonsiella" NA
534609 NA NA
235390 NA NA
98457 "Rhodoplanes" NA
179213 NA NA
262076 NA NA
279470 NA NA
560842 "Tissierella" NA
247816 "Trichormus" "Trichormusvariabilis"
182728 "Blautia" NA
112749 NA NA
362373 "Halomonas" NA
55799 NA NA
207982 NA NA
373357 NA NA
539347 "Prevotella" NA
23777 "Desulfomicrobium" "Desulfomicrobiumorale"
278398 NA NA
578828 "Alicycliphilus" NA
36647 NA NA
573761 "Microbulbifer" NA
197095 "Oscillospira" NA
336539 NA NA
573607 NA NA
2538 NA NA
73076 NA NA
257199 "Legionella" NA
298252 "Butyrivibrio" NA
522087 "Parabacteroides" NA
50120 "Clostridium" NA
537429 NA NA
548838 NA NA
343119 NA NA
362382 "Francisella" NA
239490 NA NA
183122 "Echinicola" NA
3581 "Fibrobacter" "Fibrobactersuccinogenes"
368027 NA NA
70528 "Bacillus" NA
97627 "Hylemonella" NA
510817 NA NA
86556 "Deinococcus" NA
305437 "Lachnobacterium" NA
114292 "Kaistobacter" NA
93610 "Luteimonas" NA
548077 NA NA
133568 NA NA
223711 "Devosia" NA
192952 NA NA
333279 "Roseburia" NA
296956 NA NA
115230 "Vagococcus" "Vagococcuslutrae"
264558 NA NA
261919 NA NA
125536 NA NA
244674 NA NA
582971 "LCP-6" NA
361304 "Bacteroides" NA
88335 NA NA
198740 "Eubacterium" NA
544430 "Parachlamydia" "Parachlamydiaacanthamoebae"
269355 "Spirosoma" NA
512598 NA NA
182894 "Adlercreutzia" NA
533078 "Caldilinea" NA
516971 NA NA
369734 NA NA
222914 NA NA
471308 "Lactobacillus" "Lactobacillussalivarius"
583669 NA NA
36624 NA NA
13069 "Mycobacterium" NA
538805 NA NA
193576 "Clostridium" NA
511119 NA NA
522127 NA NA
580835 "Tenacibaculum" NA
579000 NA NA
91532 NA NA
470724 "Neisseria" "Neisserialactamica"
236430 NA NA
322045 "Massilia" "Massiliatimonae"
314793 NA NA
272602 NA NA
553285 NA NA
228762 "Clostridium" NA
590547 NA NA
454435 "Legionella" NA
103639 NA NA
269075 "Rhodopirellula" NA
203691 NA NA
229514 "CandidatusSolibacter" NA
352654 "Rhodopirellula" NA
248442 NA NA
306610 "Sulfurimonas" NA
292521 "Bifidobacterium" NA
279083 "Leptolyngbya" NA
333775 "Clostridium" NA
588604 NA NA
572242 NA NA
201720 NA NA
544325 NA NA
239291 "Luteolibacter" NA
345211 "Coprococcus" NA
582509 NA NA
241853 "Bacteriovorax" NA
106480 NA NA
205713 "Rhizobium" NA
322112 NA NA
63221 "LCP-6" NA
Warning message:
system call failed: Cannot allocate memory
phyloseq documentation built on Nov. 8, 2020, 6:41 p.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value See Also Examples
Description
Now a legacy-format, older versions of QIIME
produced an OTU file that typically contains both OTU-abundance
and taxonomic identity information in a tab-delimted table.
If your file ends with the extension .biom, or if you happen to know
that it is a biom-format file, or if you used default settings in a version
of QIIME of 1.7 or greater,
then YOU SHOULD USE THE BIOM-IMPORT FUNCTION instead,
import_biom.
Usage
1 2 | import_qiime_otu_tax(file, parseFunction = parse_taxonomy_qiime,
verbose = TRUE, parallel = FALSE)
|
Arguments
file |
(Required). The path to the qiime-formatted file you want to
import into R. Can be compressed (e.g. |
parseFunction |
(Optional). An optional custom function for parsing the
character string that contains the taxonomic assignment of each OTU.
The default parsing function is |
verbose |
(Optional). A |
parallel |
(Optional). Logical. Should the parsing be performed in
parallel?. Default is |
Details
This function uses chunking to perform both the reading and parsing in blocks of optional size, thus constrain the peak memory usage. feature should make this importer accessible to machines with modest memory, but with the caveat that the full numeric matrix must be a manageable size at the end, too. In principle, the final tables will be large, but much more efficiently represented than the character-stored numbers. If total memory for storing the numeric matrix becomes problematic, a switch to a sparse matrix representation of the abundance – which is typically well-suited to this data – might provide a solution.
Value
A list of two matrices. $otutab contains the OTU Table
as a numeric matrix, while $taxtab contains a character matrix
of the taxonomy assignments.
See Also
Examples
1 2 | otufile <- system.file("extdata", "GP_otu_table_rand_short.txt.gz", package="phyloseq")
import_qiime_otu_tax(otufile)
|
Example output
Reading file into memory prior to parsing...
Detecting first header line...
Header is on line 2
Converting input file to a table...
Defining OTU table...
Parsing taxonomy table...
$otutab
AQC1cm AQC4cm AQC7cm CC1 CL3 Even1 Even2 Even3 F21Fcsw F21Plmr F21Tong
338272 0 0 0 0 0 0 0 0 34 0 0
289855 0 0 0 0 0 0 0 0 0 0 0
287759 9 5 15 1 0 0 0 1 0 0 0
334839 0 0 0 0 0 0 0 0 428 0 0
144065 2 0 0 21 191 0 0 0 0 0 0
18643 0 0 0 0 0 0 0 0 0 0 0
218985 72 168 118 174 14 0 0 0 0 0 0
238997 0 0 0 0 1 0 0 0 0 0 0
245893 0 0 0 0 0 0 0 0 0 0 0
131765 0 0 0 0 0 0 0 1 0 0 0
536982 0 0 0 0 0 0 0 0 0 0 0
351629 0 0 0 79 40 2 2 3 0 8 0
321069 0 0 0 0 0 0 0 0 0 0 0
512157 0 0 0 0 0 0 0 0 0 0 0
193230 0 0 0 0 0 3 4 0 62 0 0
107461 49 30 13 6 0 0 0 2 0 0 3
329570 0 0 0 3 5 0 0 0 0 0 0
35881 0 0 0 0 0 0 0 0 0 0 0
260458 0 0 0 1 0 0 0 0 0 0 0
279132 0 0 0 0 0 0 0 0 0 0 0
548884 22 60 54 8 1 0 0 0 0 0 0
288119 0 0 0 6 30 0 0 0 0 0 0
192899 0 0 0 0 0 0 1 2 0 0 0
531589 0 0 0 0 0 0 0 0 1 0 0
90465 3 0 0 1 0 0 0 0 0 0 0
556145 0 0 0 0 0 0 0 0 0 0 0
542118 0 0 0 1 4 0 0 1 0 0 0
513763 199 2230 2110 0 0 2 2 0 0 0 3
344513 1 0 0 0 0 0 0 0 0 0 0
141836 3 8 4 0 0 0 0 0 0 0 0
129783 0 0 0 0 0 8 9 13 0 0 0
198528 0 0 0 2 1 0 0 0 7 0 0
258229 0 0 0 0 0 0 0 0 0 0 0
70461 0 0 0 0 0 0 0 0 1 0 0
303295 0 0 4 476 517 4 1 3 0 0 0
313089 0 0 0 0 1 0 0 0 173 0 0
254133 0 0 0 6 5 0 0 0 0 0 0
276351 0 0 0 0 0 0 0 0 0 0 0
275935 1 0 0 8 220 3 0 1 0 22 0
339472 0 0 0 0 0 0 0 0 0 0 0
508980 9 32 48 0 0 0 0 0 0 0 0
175045 0 1 2 0 0 27 1 0 0 2 1
341275 327 361 580 184 227 0 3 0 0 0 1
8389 0 0 0 0 0 0 0 0 0 0 0
571389 3 6 8 0 0 0 0 0 0 0 0
223948 0 0 0 91 8 0 0 0 0 0 0
239064 2 5 1 39 12 3 1 2 1 36 0
253651 0 0 0 4 2 0 0 0 0 0 0
236550 1 2 3 342 28 0 0 0 0 11 0
526081 4 0 0 5 0 348 271 275 7 2 4
511558 16 33 34 12 12 1 0 1 0 0 0
26061 0 0 0 0 0 0 0 0 0 169 13
164557 3 1 1 0 1 0 0 0 0 0 0
71074 0 1 0 341 93 4 3 30 0 58 0
148678 2 1 0 0 0 0 0 0 0 0 0
356589 0 0 1 0 1 0 0 0 0 0 0
16072 0 1 0 0 0 1 0 1 4 0 0
210791 0 0 0 1 0 1 0 0 0 0 0
576850 0 3 0 5 41 0 0 0 71 0 0
12364 0 0 1 7 0 0 0 0 0 0 0
511687 1 0 0 0 0 0 0 0 0 0 0
247518 0 0 0 6 0 0 0 0 0 0 0
287763 0 0 0 0 0 0 0 0 0 0 0
144921 0 0 0 1 0 0 0 0 0 0 0
215890 2 0 0 0 1 0 1 1 0 8 2
511371 0 0 0 3 0 0 0 0 0 0 0
278955 22 1 1 67 7 2 0 0 0 0 0
10857 0 8 7 0 0 0 0 0 0 0 0
509572 12 58 50 0 0 0 0 1 0 0 0
236118 0 0 1 3 19 0 0 0 0 0 0
100870 0 0 0 0 0 0 0 0 0 0 0
137557 0 0 0 0 0 0 0 0 0 0 0
240686 0 0 0 7 1 0 0 0 0 0 0
153026 0 0 0 2 0 0 0 0 0 0 0
277196 0 0 0 0 0 1 1 0 0 0 0
279590 12 27 22 1132 597 2 3 0 0 0 0
470599 0 0 0 0 0 0 0 0 0 5 0
550164 0 0 0 1 0 0 0 0 0 0 0
72610 0 0 0 0 0 0 0 0 0 21 4
550329 52 4 0 0 0 0 0 0 0 0 1
304950 0 3 0 0 0 6 0 0 0 0 1
574226 0 0 0 0 2 0 1 0 0 0 0
244496 482 115 85 0 0 10 0 0 1 0 2
89337 1 0 0 26 288 1 0 1 0 0 0
546723 0 0 0 0 0 0 0 0 0 0 0
212619 14 8 1 2 2 88 42 67 1369 2 3
137099 0 0 0 12 91 1 0 0 0 0 0
312030 26 4 1 0 1 3 0 1 1 0 4
296377 0 0 0 2 1 2 0 0 1133 0 0
487725 0 0 0 4 4 0 0 1 0 0 0
470823 0 0 0 0 0 0 0 0 0 0 0
546756 2 0 0 71 74 2 0 0 0 0 0
160337 1 0 1 25 62 0 0 1 0 1 0
556276 2 2 2 53 7 0 1 0 0 0 0
588981 0 0 0 0 0 0 0 0 0 0 1
306684 360 429 357 1097 452 5 3 0 0 0 0
157866 0 0 0 0 0 0 0 0 0 0 0
238929 21 171 94 33 163 2 0 2 1 0 0
259028 1 2 1 0 0 2 0 0 0 0 0
200064 1335 860 659 0 1 10 1 2 0 0 0
104310 1 3 0 43 46 0 0 0 0 1 0
152720 0 0 0 1 0 0 0 0 0 0 1
263307 0 0 0 0 0 0 0 0 0 2 0
346253 0 0 0 0 0 3 5 8 73 0 0
8096 45 99 159 2 1 0 0 0 0 0 0
245050 0 0 0 0 19 2 0 0 0 0 0
286030 0 0 0 0 0 0 0 0 0 0 0
100757 0 0 0 0 0 0 0 0 0 2 6
210865 0 0 0 7 27 0 0 0 0 0 0
261709 0 0 0 1 0 0 0 0 0 0 0
10517 0 0 0 0 0 0 0 0 5 0 0
113626 0 2 7 1214 210 3 5 12 0 3 0
240591 258 919 1037 2144 186 5 6 0 1 2 0
88301 0 1 0 20 1 0 0 0 0 2 0
585355 0 0 0 2 0 0 0 0 0 0 0
153762 0 0 0 0 0 0 0 0 0 0 0
330803 4 0 0 0 0 0 0 0 0 0 0
526490 0 0 0 0 0 0 0 0 1 0 0
258502 0 0 0 2 0 0 0 0 0 0 0
70379 0 0 0 0 0 0 0 0 0 0 0
161544 9 8 12 31 7 0 1 0 0 0 0
181819 0 0 0 1 0 0 0 0 0 0 0
292556 0 0 0 1 7 0 0 0 0 0 0
538794 38 240 281 0 0 0 0 0 0 0 0
341901 0 0 1 33 4 0 0 0 1 0 0
185339 0 0 0 0 0 0 0 0 12 0 0
547752 3 3 2 37 163 1 0 0 0 0 0
510626 0 1 0 0 0 3 2 1 0 0 0
140805 0 2 0 0 1 0 0 0 0 0 0
565375 16 118 175 17 0 0 0 0 0 0 0
534516 0 0 0 0 0 0 0 1 0 1 0
326644 0 0 0 0 0 0 0 0 2 0 0
332464 3 19 25 53 27 1 0 0 0 0 0
578831 0 0 0 0 0 0 0 0 0 0 0
556231 0 1 1 4 5 0 0 0 0 17 0
108870 0 0 0 1 0 0 0 0 0 0 0
167215 0 0 0 0 0 0 0 0 0 0 0
343453 0 0 0 0 0 0 0 0 0 0 0
315848 0 5 4 0 1 2 0 0 0 1 1
257176 0 0 0 2 1 0 0 0 0 0 0
329327 0 0 0 11 87 1 0 0 0 0 0
292288 0 2 0 0 0 0 1 0 0 0 0
213873 0 0 2 75 23 0 0 0 0 0 0
275402 0 0 0 0 0 0 0 0 0 0 0
563574 0 0 0 0 0 0 0 0 0 0 0
533036 0 4 1 0 0 0 0 0 0 0 0
591098 3 16 27 0 0 0 0 0 0 0 0
554003 2 5 5 0 0 2 0 0 0 0 0
258006 4 12 6 13 3 0 0 0 0 0 0
254841 0 0 0 1 0 0 0 0 0 0 0
307569 0 0 0 0 0 0 0 1 0 0 0
102209 0 0 0 5 1 0 0 0 0 0 0
114783 0 6 5 5 0 0 0 1 0 0 0
561842 0 5 5 346 217 2 1 1 0 0 1
204177 0 0 0 55 3 0 0 0 0 0 0
143463 3 41 29 0 0 0 0 0 0 0 0
244840 0 2 3 22 35 0 0 0 0 0 0
262115 0 0 0 20 0 0 0 0 0 3 0
309328 0 0 0 0 0 0 0 0 0 0 0
329074 1 0 1 19 295 2 0 0 0 0 0
570930 0 0 0 0 0 0 0 0 83 0 0
1718 0 0 0 0 0 0 0 0 0 0 0
89763 0 2 2 204 35 0 0 0 0 0 0
212596 2 8 3 284 1420 3 2 0 0 0 1
100157 0 0 0 32 3 0 0 0 0 0 0
150577 0 2 1 0 0 0 0 0 0 0 0
291739 0 0 0 0 0 7 7 10 1 0 0
540283 5 26 28 0 0 1 0 0 0 0 0
349780 0 0 0 0 0 0 0 0 0 0 0
166871 2 7 1 1 0 6 1 1 0 1 2
171551 383 31 20 48 189 172 26 51 18387 11 35
509511 0 0 0 4 3 0 0 0 0 0 0
329744 3542 695 2908 23 21 129 66 99 27 29 1360
183985 0 0 0 0 0 0 0 0 2 0 0
204462 0 0 6 279 1027 4 1 0 0 0 0
165257 0 0 0 0 0 0 0 0 0 0 0
291710 0 0 0 0 4 0 0 0 0 0 0
88682 0 0 0 0 0 0 0 0 0 0 0
6697 1 1 4 0 0 0 0 0 0 0 0
136044 3 0 0 0 0 1 1 0 1 0 0
557121 0 1 0 0 0 0 0 0 0 0 0
143699 0 0 0 2 0 0 0 1 0 0 0
103157 0 0 0 1 0 0 0 0 0 0 0
157625 0 0 0 0 0 0 0 0 0 0 0
65695 0 0 0 1 2 0 0 0 0 0 0
82548 0 0 0 8 0 0 0 0 0 0 0
234044 0 0 0 0 0 0 0 0 0 0 0
280233 0 0 0 2 12 0 0 0 0 0 0
269778 1 0 1 4 0 0 1 2 0 0 0
589130 0 0 0 0 0 2 0 0 0 0 0
521924 0 0 1 0 0 0 0 0 0 0 0
165369 0 0 1 0 0 0 0 0 0 0 0
552779 0 0 0 0 0 0 0 0 1083 0 0
224569 0 0 0 0 0 13 4 9 0 1 0
471141 58 23 52 20 8 25 29 11 12 782 95813
151439 7 7 9 914 18 0 6 0 0 0 1
9510 6 2 5 3 2 5 4 2 1 75 4805
155970 0 0 0 0 5 0 0 0 0 0 0
568881 0 3 8 0 0 0 0 0 0 0 0
113959 13 15 15 1879 6577 41 5 1 1 3 2
542003 1 0 0 0 0 0 0 0 0 0 0
589802 4 32 34 35 245 1 2 1 0 0 1
196433 0 0 0 0 0 0 0 0 0 0 0
139752 0 0 0 0 0 0 0 0 0 0 0
350732 0 0 0 0 0 0 0 1 0 0 2
298533 0 0 0 1 7 1 0 0 0 0 0
31334 0 0 0 1 1 0 0 0 0 0 0
139641 0 0 0 0 0 0 0 0 0 0 0
77467 2 6 3 0 0 2 0 0 0 0 0
593006 7 9 14 1440 372 2 1 0 0 0 1
189485 13 0 0 0 0 0 0 0 1 0 0
69664 0 0 0 0 0 0 0 0 0 0 0
136740 1 15 15 6 5 0 0 0 0 0 0
25695 0 0 0 0 0 0 0 0 4 0 0
136925 0 1 1 0 0 0 0 0 0 0 0
26036 0 0 1 0 0 0 0 0 0 0 0
514272 0 0 0 0 0 0 0 1 30 0 0
588882 1 0 0 0 0 0 0 0 0 0 0
101544 3 0 2 0 0 0 0 0 0 0 0
2783 0 0 0 0 0 0 0 0 0 0 0
218035 4 3 2 452 69 0 1 0 0 39 1
581733 162 349 240 0 1 0 0 0 0 0 0
266208 0 0 0 5 24 0 0 0 0 0 0
469382 69 25 13 20 0 1 0 0 0 0 0
144746 0 0 0 0 0 0 0 0 0 0 0
138816 0 1 0 4 3 0 0 0 0 0 0
577111 78 508 551 0 0 1 0 0 0 0 0
114978 33 51 29 6 0 1 0 0 0 0 0
154106 3 1 0 0 0 0 0 0 0 13 128
521453 0 0 1 0 0 0 0 0 0 0 0
10660 0 0 0 0 0 0 0 0 0 0 0
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257199 0 0 2 0 0 0 0 0
298252 0 0 0 0 0 0 0 5
522087 0 0 0 0 0 0 0 0
50120 0 0 0 0 0 0 0 0
537429 0 0 0 0 0 0 0 0
548838 7659 1 0 10 2 0 3 0
343119 0 0 0 7 15 4 0 0
362382 5 0 0 6 12 4 0 0
239490 0 0 1 0 0 1 0 0
183122 0 0 0 0 0 0 0 0
3581 0 0 1 0 0 0 0 0
368027 0 0 86 0 1 0 0 0
70528 0 0 0 0 0 0 0 0
97627 1 5 92 0 0 0 0 0
510817 0 0 0 0 0 5 424 10
86556 0 0 30 0 1 0 0 0
305437 0 0 0 0 0 0 1 0
114292 0 1 150 1 0 0 0 0
93610 0 0 1 0 0 0 0 0
548077 0 0 169 0 0 0 0 0
133568 1 6 3 2 1 0 0 0
223711 0 0 0 0 1 0 0 0
192952 0 0 0 0 0 0 4 4
333279 0 0 0 0 0 0 0 0
296956 0 0 0 0 0 0 0 0
115230 0 0 0 0 0 0 0 0
264558 0 0 0 0 0 0 0 0
261919 1 0 0 0 0 0 0 0
125536 0 1 0 1 1 1 0 0
244674 0 2 0 0 0 0 0 0
582971 0 0 0 0 0 0 0 0
361304 0 0 0 0 0 0 21 0
88335 0 0 722 1 0 0 0 0
198740 0 0 0 0 0 0 6 3
544430 0 0 0 0 0 0 0 0
269355 0 0 0 0 0 0 0 0
512598 0 0 0 0 0 0 0 0
182894 0 0 0 0 0 0 1 29
533078 0 0 0 0 0 0 0 0
516971 3 0 0 0 1 0 0 0
369734 0 0 253 0 0 0 0 0
222914 1 0 2 0 0 0 0 0
471308 1 0 0 0 0 0 0 0
583669 0 1 209 0 10 0 0 0
36624 0 0 0 0 0 0 0 0
13069 0 0 0 0 0 1 0 0
538805 0 0 3 0 0 0 0 0
193576 0 0 0 0 0 0 0 0
511119 0 0 0 0 5 37 0 0
522127 0 0 0 0 0 0 0 0
580835 7 0 0 0 0 0 0 0
579000 0 0 0 0 0 0 0 0
91532 1 0 0 0 0 0 0 0
470724 0 0 0 0 0 0 0 0
236430 0 0 0 0 0 0 0 0
322045 1 2 23 0 0 0 0 0
314793 0 0 0 0 0 1 0 0
272602 0 0 0 0 0 0 0 0
553285 0 0 0 0 2 8 0 0
228762 0 0 0 0 0 0 3 2
590547 0 0 1 0 0 0 0 0
454435 0 0 1 0 0 0 0 0
103639 0 0 0 1 4 5 0 0
269075 0 0 0 0 0 2 0 0
203691 0 0 0 0 0 0 1 0
229514 0 0 0 0 0 0 0 0
352654 0 78 4 1 0 1 0 0
248442 2 0 0 0 12 1 0 0
306610 0 0 0 12 0 0 0 0
292521 0 0 0 0 0 0 25 141
279083 0 0 0 0 0 0 1 0
333775 0 0 0 0 0 0 1 1
588604 0 2 5 0 0 0 0 0
572242 0 0 10 0 0 0 0 0
201720 0 0 0 0 0 0 0 0
544325 1 8 0 1 0 0 0 0
239291 0 0 0 0 1 0 0 0
345211 0 0 0 0 0 0 2 1
582509 0 0 0 0 37 26 0 1
241853 3 0 0 1 10 0 0 0
106480 0 0 0 0 0 0 0 0
205713 0 0 0 0 0 0 0 0
322112 0 0 0 0 0 0 0 0
63221 0 7 0 0 0 0 0 1
$taxtab
Taxonomy Table: [500 taxa by 7 taxonomic ranks]:
Kingdom Phylum Class
338272 "Bacteria" "Firmicutes" "Clostridia"
289855 "Bacteria" "Firmicutes" "Clostridia"
287759 "Bacteria" "Bacteroidetes" "Flavobacteria"
334839 "Bacteria" "Firmicutes" "Clostridia"
144065 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
18643 "Bacteria" "Proteobacteria" "Zetaproteobacteria"
218985 "Bacteria" "Chloroflexi" "SOGA31"
238997 "Bacteria" "Acidobacteria" "Solibacteres"
245893 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
131765 "Bacteria" "Bacteroidetes" "Bacteroidia"
536982 "Bacteria" "Chloroflexi" "Anaerolineae"
351629 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
321069 "Bacteria" "Actinobacteria" "Actinobacteria"
512157 "Bacteria" "Bacteroidetes" "Flavobacteria"
193230 "Bacteria" "Firmicutes" "Clostridia"
107461 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
329570 "Bacteria" "Planctomycetes" "Planctomycea"
35881 "Bacteria" "Bacteroidetes" "Flavobacteria"
260458 "Bacteria" "Thermi" "Deinococci"
279132 "Bacteria" "Bacteroidetes" "Flavobacteria"
548884 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
288119 "Bacteria" "Bacteroidetes" "Bacteroidia"
192899 "Bacteria" "Firmicutes" "Clostridia"
531589 "Bacteria" "Tenericutes" "Mollicutes"
90465 "Bacteria" "Spirochaetes" "Spirochaetes"
556145 "Bacteria" "Bacteroidetes" "Sphingobacteria"
542118 "Bacteria" "Actinobacteria" "Actinobacteria"
513763 "Bacteria" "Chloroflexi" "Dehalococcoidetes"
344513 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
141836 "Bacteria" "Proteobacteria" "Betaproteobacteria"
129783 "Bacteria" "Firmicutes" "Clostridia"
198528 "Bacteria" "Firmicutes" "Clostridia"
258229 "Bacteria" "Chlorobi" "SM1B09"
70461 "Bacteria" "Bacteroidetes" "Bacteroidia"
303295 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
313089 "Bacteria" "Firmicutes" "Clostridia"
254133 "Bacteria" "Armatimonadetes" "5B-18"
276351 "Bacteria" "Bacteroidetes" "Sphingobacteria"
275935 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
339472 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
508980 "Bacteria" "Nitrospirae" "Nitrospira"
175045 "Archaea" "Crenarchaeota" "Thaumarchaeota"
341275 "Bacteria" "Acidobacteria" NA
8389 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
571389 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
223948 "Bacteria" "Acidobacteria" "Chloracidobacteria"
239064 "Bacteria" "Proteobacteria" "Betaproteobacteria"
253651 "Bacteria" "Actinobacteria" "Actinobacteria"
236550 "Bacteria" "Proteobacteria" "Betaproteobacteria"
526081 "Bacteria" "Firmicutes" "Clostridia"
511558 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
26061 "Bacteria" "Actinobacteria" "Actinobacteria"
164557 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
71074 "Archaea" "Crenarchaeota" "Thaumarchaeota"
148678 "Bacteria" "Bacteroidetes" "Flavobacteria"
356589 "Bacteria" "Proteobacteria" "Betaproteobacteria"
16072 "Bacteria" "Firmicutes" "Clostridia"
210791 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
576850 "Bacteria" "Tenericutes" "Mollicutes"
12364 "Bacteria" "Actinobacteria" "Actinobacteria"
511687 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
247518 "Bacteria" "TM6" "SJA-4"
287763 "Bacteria" "Bacteroidetes" "Bacteroidia"
144921 "Bacteria" "Actinobacteria" "Actinobacteria"
215890 "Bacteria" "Firmicutes" "Clostridia"
511371 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
278955 "Bacteria" "Planctomycetes" "Planctomycea"
10857 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
509572 "Bacteria" "Chloroflexi" "Anaerolineae"
236118 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
100870 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
137557 "Bacteria" "Firmicutes" "Bacilli"
240686 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
153026 "Bacteria" "Bacteroidetes" "Sphingobacteria"
277196 "Bacteria" "Firmicutes" "Clostridia"
279590 "Bacteria" "Acidobacteria" "Acidobacteria"
470599 "Bacteria" "Firmicutes" "Bacilli"
550164 "Bacteria" "Bacteroidetes" "Sphingobacteria"
72610 "Bacteria" "Spirochaetes" "Spirochaetes"
550329 "Bacteria" "Cyanobacteria" "Chloroplast"
304950 "Bacteria" "Gemmatimonadetes" "Gemmatimonadetes"
574226 "Bacteria" "Actinobacteria" "Actinobacteria"
244496 "Bacteria" "Verrucomicrobia" "Spartobacteria"
89337 "Bacteria" "Actinobacteria" "Actinobacteria"
546723 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
212619 "Bacteria" "Firmicutes" "Clostridia"
137099 "Bacteria" "Verrucomicrobia" "Verrucomicrobiae"
312030 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
296377 "Bacteria" "Firmicutes" "Clostridia"
487725 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
470823 "Bacteria" "Bacteroidetes" "Bacteroidia"
546756 "Bacteria" "Proteobacteria" "Betaproteobacteria"
160337 "Bacteria" "Actinobacteria" "Actinobacteria"
556276 "Bacteria" "Bacteroidetes" "Sphingobacteria"
588981 "Bacteria" "Actinobacteria" "Actinobacteria"
306684 "Bacteria" "Bacteroidetes" "Sphingobacteria"
157866 "Bacteria" "Firmicutes" "Bacilli"
238929 "Bacteria" "Verrucomicrobia" "Verrucomicrobiae"
259028 "Bacteria" "Planctomycetes" "Planctomycea"
200064 "Bacteria" "Planctomycetes" "Planctomycea"
104310 "Bacteria" "Actinobacteria" "Actinobacteria"
152720 "Bacteria" "Actinobacteria" "Actinobacteria"
263307 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
346253 "Bacteria" "Firmicutes" "Clostridia"
8096 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
245050 "Bacteria" "Bacteroidetes" "Bacteroidia"
286030 "Bacteria" "Actinobacteria" "Actinobacteria"
100757 "Bacteria" "Actinobacteria" "Actinobacteria"
210865 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
261709 "Bacteria" "Actinobacteria" "Actinobacteria"
10517 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
113626 "Bacteria" "Acidobacteria" "Chloracidobacteria"
240591 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
88301 "Bacteria" "Proteobacteria" "Betaproteobacteria"
585355 "Bacteria" "Firmicutes" "Clostridia"
153762 "Archaea" "Crenarchaeota" "Thaumarchaeota"
330803 "Bacteria" "Bacteroidetes" "Flavobacteria"
526490 "Bacteria" "Firmicutes" "Clostridia"
258502 "Bacteria" "Firmicutes" "Clostridia"
70379 "Bacteria" "TM7" "TM7-3"
161544 "Bacteria" "Actinobacteria" "Actinobacteria"
181819 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
292556 "Bacteria" "Firmicutes" "Clostridia"
538794 "Bacteria" "NC10" "12-24"
341901 "Bacteria" "Actinobacteria" "Actinobacteria"
185339 "Bacteria" "Firmicutes" "Clostridia"
547752 "Bacteria" "Proteobacteria" "Betaproteobacteria"
510626 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
140805 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
565375 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
534516 "Bacteria" "Chloroflexi" "Thermomicrobia"
326644 "Bacteria" "Firmicutes" "Clostridia"
332464 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
578831 "Bacteria" "Bacteroidetes" "Sphingobacteria"
556231 "Bacteria" "Proteobacteria" "Betaproteobacteria"
108870 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
167215 "Bacteria" "Firmicutes" "Clostridia"
343453 "Bacteria" "Bacteroidetes" "Bacteroidia"
315848 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
257176 "Bacteria" "Actinobacteria" "Actinobacteria"
329327 "Bacteria" "Fibrobacteres" "Fibrobacteres"
292288 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
213873 "Bacteria" "Planctomycetes" "Planctomycea"
275402 "Bacteria" "Actinobacteria" "Actinobacteria"
563574 "Bacteria" "Firmicutes" "Clostridia"
533036 "Bacteria" "Planctomycetes" "Planctomycea"
591098 "Bacteria" "TM6" "SBRH58"
554003 "Bacteria" "Planctomycetes" "Phycisphaerae"
258006 "Bacteria" "Acidobacteria" "Chloracidobacteria"
254841 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
307569 "Bacteria" "Firmicutes" "Clostridia"
102209 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
114783 "Bacteria" "Proteobacteria" "Betaproteobacteria"
561842 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
204177 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
143463 "Bacteria" "GOUTA4" "RB384"
244840 "Bacteria" "Planctomycetes" "Planctomycea"
262115 "Bacteria" "SC4" NA
309328 "Bacteria" "Planctomycetes" "vadinHA49"
329074 "Bacteria" "Acidobacteria" "RB25"
570930 "Bacteria" "Firmicutes" "Clostridia"
1718 "Bacteria" "Acidobacteria" "iii1-8"
89763 "Bacteria" "Actinobacteria" "Actinobacteria"
212596 "Bacteria" "Acidobacteria" "Solibacteres"
100157 "Bacteria" "Actinobacteria" "Actinobacteria"
150577 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
291739 "Bacteria" "Bacteroidetes" "Bacteroidia"
540283 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
349780 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
166871 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
171551 "Bacteria" "Firmicutes" "Clostridia"
509511 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
329744 "Bacteria" "Actinobacteria" "Actinobacteria"
183985 "Bacteria" "Firmicutes" "Clostridia"
204462 "Bacteria" "Acidobacteria" "Solibacteres"
165257 "Bacteria" "Firmicutes" "Clostridia"
291710 "Bacteria" "Firmicutes" "Clostridia"
88682 "Bacteria" "Bacteroidetes" "Flavobacteria"
6697 "Bacteria" "Proteobacteria" "Betaproteobacteria"
136044 "Bacteria" "Firmicutes" "Clostridia"
557121 "Archaea" "Euryarchaeota" "Methanomicrobia"
143699 "Bacteria" "Proteobacteria" "Betaproteobacteria"
103157 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
157625 "Bacteria" "Firmicutes" "Clostridia"
65695 "Bacteria" "TM7" "TM7-1"
82548 "Bacteria" "Bacteroidetes" "Sphingobacteria"
234044 "Bacteria" "Proteobacteria" "Betaproteobacteria"
280233 "Bacteria" "Acidobacteria" NA
269778 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
589130 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
521924 "Bacteria" "Chloroflexi" "Anaerolineae"
165369 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
552779 "Bacteria" "Bacteroidetes" "Bacteroidia"
224569 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
471141 "Bacteria" "Actinobacteria" "Actinobacteria"
151439 "Bacteria" "Proteobacteria" "Betaproteobacteria"
9510 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
155970 "Bacteria" "Verrucomicrobia" "Verrucomicrobiae"
568881 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
113959 "Bacteria" "Acidobacteria" NA
542003 "Bacteria" "Bacteroidetes" "Flavobacteria"
589802 "Bacteria" "Acidobacteria" "Solibacteres"
196433 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
139752 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
350732 "Bacteria" "Firmicutes" "Clostridia"
298533 "Bacteria" "Bacteroidetes" "Bacteroidia"
31334 "Bacteria" "Firmicutes" "Bacilli"
139641 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
77467 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
593006 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
189485 "Bacteria" "Firmicutes" "Clostridia"
69664 "Bacteria" "Firmicutes" "Clostridia"
136740 "Bacteria" "Nitrospirae" "Nitrospira"
25695 "Bacteria" "Firmicutes" "Clostridia"
136925 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
26036 "Bacteria" "Firmicutes" "Clostridia"
514272 "Bacteria" "Firmicutes" "Clostridia"
588882 "Bacteria" "Acidobacteria" "Solibacteres"
101544 "Bacteria" "Proteobacteria" "Betaproteobacteria"
2783 "Bacteria" "Planctomycetes" "Planctomycea"
218035 "Bacteria" "Actinobacteria" "Actinobacteria"
581733 "Bacteria" "Acidobacteria" "RB25"
266208 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
469382 "Bacteria" "Bacteroidetes" "Flavobacteria"
144746 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
138816 "Bacteria" "Acidobacteria" "Acidobacteria"
577111 "Bacteria" "Nitrospirae" "Nitrospira"
114978 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
154106 "Bacteria" "Firmicutes" "Bacilli"
521453 "Bacteria" "Bacteroidetes" "Flavobacteria"
10660 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
162326 "Bacteria" "Bacteroidetes" "Sphingobacteria"
265749 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
583500 "Bacteria" "Firmicutes" "Clostridia"
273850 "Bacteria" "Firmicutes" "Clostridia"
218005 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
566717 "Bacteria" "Firmicutes" "Bacilli"
10113 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
304270 "Bacteria" "Chloroflexi" "Anaerolineae"
137403 "Bacteria" "Bacteroidetes" "Bacteroidia"
237003 "Bacteria" "Firmicutes" "Clostridia"
512616 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
339015 "Bacteria" "Proteobacteria" "Betaproteobacteria"
136780 "Bacteria" "Actinobacteria" "Actinobacteria"
349277 "Bacteria" "Actinobacteria" "Actinobacteria"
109792 "Bacteria" "Firmicutes" "Clostridia"
206278 "Bacteria" "Chloroflexi" "SOGA31"
159246 "Bacteria" "Cyanobacteria" "Synechococcophycideae"
350731 "Bacteria" "Firmicutes" "Clostridia"
588899 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
305967 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
591496 "Bacteria" "Firmicutes" "Clostridia"
233805 "Bacteria" "Bacteroidetes" "Bacteroidia"
536009 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
142784 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
295422 "Bacteria" "Proteobacteria" "Betaproteobacteria"
558838 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
113510 "Bacteria" "Bacteroidetes" "Sphingobacteria"
524765 "Bacteria" "Planctomycetes" "Planctomycea"
561594 "Bacteria" "Firmicutes" "Bacilli"
161340 "Bacteria" "Proteobacteria" "Betaproteobacteria"
313166 "Bacteria" "Bacteroidetes" "Bacteroidia"
321885 "Bacteria" "Planctomycetes" "Planctomycea"
163176 "Bacteria" "Proteobacteria" "Betaproteobacteria"
328739 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
268617 "Bacteria" "Bacteroidetes" "Sphingobacteria"
114029 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
561793 "Bacteria" "Chlorobi" "BSV19"
503327 "Bacteria" "Actinobacteria" "Actinobacteria"
172221 "Bacteria" "Chlorobi" "BSV19"
93537 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
261774 "Bacteria" "Actinobacteria" "Actinobacteria"
535000 "Bacteria" "OP8" "OP8_1"
541076 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
13662 "Bacteria" "Firmicutes" "Clostridia"
355680 "Bacteria" "Proteobacteria" "Betaproteobacteria"
292073 "Bacteria" "Firmicutes" "Clostridia"
202238 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
112263 "Bacteria" "Firmicutes" "Clostridia"
541602 "Bacteria" "Firmicutes" "Clostridia"
555446 "Bacteria" "Proteobacteria" "Betaproteobacteria"
78316 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
588740 "Bacteria" "Planctomycetes" "PW285"
107184 "Bacteria" "Proteobacteria" "Betaproteobacteria"
23870 "Bacteria" "Actinobacteria" "Actinobacteria"
167365 "Bacteria" "Firmicutes" "Clostridia"
184403 "Bacteria" "Firmicutes" "Clostridia"
5552 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
591182 "Bacteria" "SAR406" "AB16"
576085 "Bacteria" "Actinobacteria" "Actinobacteria"
207832 "Bacteria" "Firmicutes" "Bacilli"
206632 "Bacteria" "Verrucomicrobia" "Spartobacteria"
584265 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
291610 "Bacteria" "Firmicutes" "Clostridia"
239053 "Bacteria" "Firmicutes" "Clostridia"
111986 "Bacteria" "Acidobacteria" NA
166835 "Bacteria" "Proteobacteria" "Betaproteobacteria"
103589 "Bacteria" "Cyanobacteria" "Oscillatoriophycideae"
259270 "Bacteria" "Tenericutes" "Erysipelotrichi"
525569 "Archaea" "Crenarchaeota" "C2"
144091 "Bacteria" "WS3" "PRR-12"
583211 "Bacteria" "Bacteroidetes" "Bacteroidia"
112752 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
548184 "Bacteria" "Bacteroidetes" "Sphingobacteria"
193343 "Bacteria" "Firmicutes" "Clostridia"
565944 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
72374 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
200049 "Bacteria" "Planctomycetes" "Planctomycea"
134207 "Bacteria" "Firmicutes" "Clostridia"
546975 "Bacteria" "SPAM" "0319-6G9"
28512 "Bacteria" "Acidobacteria" "Acidobacteria"
141423 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
238279 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
570817 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
319724 "Bacteria" "Armatimonadetes" "Armatimonadia"
242989 "Bacteria" "Verrucomicrobia" "Verrucomicrobiae"
76933 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
128051 "Bacteria" "Actinobacteria" "Actinobacteria"
265094 "Bacteria" "Actinobacteria" "Actinobacteria"
13333 "Bacteria" "Actinobacteria" "Actinobacteria"
240228 "Bacteria" "Chloroflexi" "Ktedonobacteria"
320879 "Bacteria" "Actinobacteria" "Actinobacteria"
276703 "Bacteria" "Firmicutes" "Clostridia"
55727 "Bacteria" "Bacteroidetes" "Sphingobacteria"
162529 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
160135 "Bacteria" "Actinobacteria" "Actinobacteria"
262464 "Bacteria" "Bacteroidetes" "Flavobacteria"
567145 "Bacteria" "Planctomycetes" "Planctomycea"
342042 "Bacteria" "Bacteroidetes" "Bacteroidia"
542129 "Bacteria" "Bacteroidetes" "Bacteroidia"
214380 "Bacteria" "Firmicutes" "Clostridia"
254706 "Bacteria" "Acidobacteria" "Chloracidobacteria"
533173 "Bacteria" "Verrucomicrobia" "TP21"
258375 "Bacteria" "Firmicutes" "Clostridia"
527741 "Bacteria" "Firmicutes" "Clostridia"
329313 "Bacteria" "Firmicutes" "Clostridia"
342865 "Bacteria" "Bacteroidetes" NA
97508 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
250451 "Bacteria" "Acidobacteria" "Solibacteres"
274500 "Bacteria" "Proteobacteria" "Betaproteobacteria"
291764 "Bacteria" "Firmicutes" "Clostridia"
42014 "Bacteria" "Cyanobacteria" "Chloroplast"
257151 "Bacteria" "Bacteroidetes" "Sphingobacteria"
29284 "Bacteria" "Actinobacteria" "Actinobacteria"
519193 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
560734 "Bacteria" "Actinobacteria" "Actinobacteria"
568172 "Bacteria" "Tenericutes" "Mollicutes"
574961 "Bacteria" "Acidobacteria" "Solibacteres"
139920 "Bacteria" "Actinobacteria" "Actinobacteria"
334326 "Bacteria" "Proteobacteria" "Epsilonproteobacteria"
328963 "Bacteria" "Cyanobacteria" "Chloroplast"
335530 "Bacteria" "Bacteroidetes" "Bacteroidia"
139346 "Bacteria" "Acidobacteria" "Solibacteres"
554250 "Bacteria" "Bacteroidetes" "Bacteroidia"
513639 "Bacteria" "Planctomycetes" "Planctomycea"
542353 "Bacteria" "Planctomycetes" "Planctomycea"
237324 "Bacteria" "Firmicutes" "Clostridia"
1941 "Bacteria" "Bacteroidetes" "Bacteroidia"
237963 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
76142 "Bacteria" "Actinobacteria" "Actinobacteria"
267568 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
545503 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
114455 "Bacteria" "Bacteroidetes" "Bacteroidia"
261663 "Bacteria" "Chloroflexi" "Bljii12"
102382 "Bacteria" "Proteobacteria" "Betaproteobacteria"
278709 "Bacteria" "Chloroflexi" "Anaerolineae"
262658 "Bacteria" "Firmicutes" "Clostridia"
558480 "Bacteria" "Cyanobacteria" "Synechococcophycideae"
152931 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
68350 "Bacteria" "Firmicutes" "Clostridia"
259956 "Bacteria" "Gemmatimonadetes" "Gemmatimonadetes"
556462 "Bacteria" "Firmicutes" "Clostridia"
330861 "Bacteria" "Cyanobacteria" "Chloroplast"
234421 "Bacteria" "Firmicutes" "Clostridia"
535209 "Bacteria" "Firmicutes" "Clostridia"
136145 "Bacteria" "Cyanobacteria" "Synechococcophycideae"
588867 "Bacteria" "Bacteroidetes" "Sphingobacteria"
91919 "Bacteria" "Actinobacteria" "Actinobacteria"
470527 "Bacteria" "Firmicutes" "Bacilli"
320847 "Bacteria" "Bacteroidetes" "Bacteroidia"
215003 "Bacteria" "Actinobacteria" "Actinobacteria"
578409 "Bacteria" "Firmicutes" "Clostridia"
295754 "Bacteria" "Firmicutes" "Clostridia"
340730 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
272782 "Bacteria" "Acidobacteria" "Solibacteres"
272261 "Bacteria" "Bacteroidetes" "Bacteroidia"
134929 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
78203 "Bacteria" "Bacteroidetes" "Sphingobacteria"
248299 "Bacteria" "Actinobacteria" "Actinobacteria"
243335 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
394191 "Bacteria" "Proteobacteria" "Betaproteobacteria"
534609 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
235390 "Bacteria" "Proteobacteria" "Betaproteobacteria"
98457 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
179213 "Bacteria" "Planctomycetes" "Planctomycea"
262076 "Bacteria" "Bacteroidetes" "Sphingobacteria"
279470 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
560842 "Bacteria" "Firmicutes" "Clostridia"
247816 "Bacteria" "Cyanobacteria" "Nostocophycideae"
182728 "Bacteria" "Firmicutes" "Clostridia"
112749 "Bacteria" "Gemmatimonadetes" "Gemmatimonadetes"
362373 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
55799 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
207982 "Bacteria" "Proteobacteria" "Betaproteobacteria"
373357 "Bacteria" "Cyanobacteria" "4C0d-2"
539347 "Bacteria" "Bacteroidetes" "Bacteroidia"
23777 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
278398 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
578828 "Bacteria" "Proteobacteria" "Betaproteobacteria"
36647 "Bacteria" "Firmicutes" "Clostridia"
573761 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
197095 "Bacteria" "Firmicutes" "Clostridia"
336539 "Bacteria" "Firmicutes" "Clostridia"
573607 "Bacteria" "Acidobacteria" "Chloracidobacteria"
2538 "Bacteria" "Bacteroidetes" "Sphingobacteria"
73076 "Bacteria" "OP8" "OP8_1"
257199 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
298252 "Bacteria" "Firmicutes" "Clostridia"
522087 "Bacteria" "Bacteroidetes" "Bacteroidia"
50120 "Bacteria" "Firmicutes" "Clostridia"
537429 "Bacteria" "Bacteroidetes" NA
548838 "Bacteria" "Bacteroidetes" "Flavobacteria"
343119 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
362382 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
239490 "Bacteria" "Planctomycetes" "Planctomycea"
183122 "Bacteria" "Bacteroidetes" "Sphingobacteria"
3581 "Bacteria" "Fibrobacteres" "Fibrobacteres"
368027 "Bacteria" "Actinobacteria" "Actinobacteria"
70528 "Bacteria" "Firmicutes" "Bacilli"
97627 "Bacteria" "Proteobacteria" "Betaproteobacteria"
510817 "Bacteria" "Firmicutes" "Clostridia"
86556 "Bacteria" "Thermi" "Deinococci"
305437 "Bacteria" "Firmicutes" "Clostridia"
114292 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
93610 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
548077 "Bacteria" "Actinobacteria" "Actinobacteria"
133568 "Bacteria" "Proteobacteria" "Betaproteobacteria"
223711 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
192952 "Bacteria" "Firmicutes" "Clostridia"
333279 "Bacteria" "Firmicutes" "Clostridia"
296956 "Bacteria" "Armatimonadetes" "Armatimonadia"
115230 "Bacteria" "Firmicutes" "Bacilli"
264558 "Bacteria" "Cyanobacteria" "Chloroplast"
261919 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
125536 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
244674 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
582971 "Bacteria" "Nitrospirae" "Nitrospira"
361304 "Bacteria" "Bacteroidetes" "Bacteroidia"
88335 "Bacteria" "Actinobacteria" "Actinobacteria"
198740 "Bacteria" "Firmicutes" "Clostridia"
544430 "Bacteria" "Chlamydiae" "Chlamydiae"
269355 "Bacteria" "Bacteroidetes" "Sphingobacteria"
512598 "Bacteria" "Acidobacteria" NA
182894 "Bacteria" "Actinobacteria" "Actinobacteria"
533078 "Bacteria" "Chloroflexi" "Anaerolineae"
516971 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
369734 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
222914 "Bacteria" "Verrucomicrobia" "Verrucomicrobiae"
471308 "Bacteria" "Firmicutes" "Bacilli"
583669 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
36624 "Bacteria" "Firmicutes" "Clostridia"
13069 "Bacteria" "Actinobacteria" "Actinobacteria"
538805 "Bacteria" "Firmicutes" "Clostridia"
193576 "Bacteria" "Firmicutes" "Clostridia"
511119 "Bacteria" "Bacteroidetes" "Bacteroidia"
522127 "Bacteria" "TG3" "TG3-1"
580835 "Bacteria" "Bacteroidetes" "Flavobacteria"
579000 "Bacteria" "Firmicutes" "Clostridia"
91532 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
470724 "Bacteria" "Proteobacteria" "Betaproteobacteria"
236430 "Bacteria" "Bacteroidetes" "Sphingobacteria"
322045 "Bacteria" "Proteobacteria" "Betaproteobacteria"
314793 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
272602 "Bacteria" "Tenericutes" "Mollicutes"
553285 "Bacteria" "Acidobacteria" NA
228762 "Bacteria" "Firmicutes" "Clostridia"
590547 "Bacteria" "Firmicutes" "Clostridia"
454435 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
103639 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
269075 "Bacteria" "Planctomycetes" "Planctomycea"
203691 "Bacteria" "Actinobacteria" "Actinobacteria"
229514 "Bacteria" "Acidobacteria" "Solibacteres"
352654 "Bacteria" "Planctomycetes" "Planctomycea"
248442 "Bacteria" "Proteobacteria" "Gammaproteobacteria"
306610 "Bacteria" "Proteobacteria" "Epsilonproteobacteria"
292521 "Bacteria" "Actinobacteria" "Actinobacteria"
279083 "Bacteria" "Cyanobacteria" "Synechococcophycideae"
333775 "Bacteria" "Firmicutes" "Clostridia"
588604 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
572242 "Bacteria" "Planctomycetes" "Planctomycea"
201720 "Bacteria" "Actinobacteria" NA
544325 "Bacteria" "Bacteroidetes" "Bacteroidia"
239291 "Bacteria" "Verrucomicrobia" "Verrucomicrobiae"
345211 "Bacteria" "Firmicutes" "Clostridia"
582509 "Bacteria" "Planctomycetes" "Planctomycea"
241853 "Bacteria" "Proteobacteria" "Deltaproteobacteria"
106480 "Bacteria" "OP9" "JS1"
205713 "Bacteria" "Proteobacteria" "Alphaproteobacteria"
322112 "Bacteria" "Firmicutes" "Clostridia"
63221 "Bacteria" "Nitrospirae" "Nitrospira"
Order Family
338272 "Clostridiales" "Ruminococcaceae"
289855 "Clostridiales" NA
287759 "Flavobacteriales" "Flavobacteriaceae"
334839 "Clostridiales" "Ruminococcaceae"
144065 "Rhodospirillales" "Acetobacteraceae"
18643 "Mariprofundales" "Mariprofundaceae"
218985 NA NA
238997 "Solibacterales" "Solibacteraceae"
245893 "Oceanospirillales" "125ds10"
131765 "Bacteroidales" "Porphyromonadaceae"
536982 "Anaerolineales" "Anaerolinaceae"
351629 "Xanthomonadales" "Xanthomonadaceae"
321069 "koll13" NA
512157 "Flavobacteriales" "Flavobacteriaceae"
193230 "Clostridiales" "Lachnospiraceae"
107461 "Rhizobiales" "Methylocystaceae"
329570 "Gemmatales" "Gemmataceae"
35881 "Flavobacteriales" "Flavobacteriaceae"
260458 "Deinococcales" "Deinococcaceae"
279132 "Flavobacteriales" "Flavobacteriaceae"
548884 "Rhodospirillales" "Rhodospirillaceae"
288119 "Bacteroidales" NA
192899 "Clostridiales" "Lachnospiraceae"
531589 "RF39" NA
90465 "Spirochaetales" "Spirochaetaceae"
556145 "Sphingobacteriales" "Cyclobacteriaceae"
542118 "Actinomycetales" "Micromonosporaceae"
513763 "NT-B4" NA
344513 "Rhodobacterales" "Hyphomonadaceae"
141836 "Burkholderiales" "Comamonadaceae"
129783 "Clostridiales" "Lachnospiraceae"
198528 "Clostridiales" "Lachnospiraceae"
258229 NA NA
70461 "Bacteroidales" "Porphyromonadaceae"
303295 "Myxococcales" "Haliangiaceae"
313089 "Clostridiales" NA
254133 NA NA
276351 "Sphingobacteriales" "Flammeovirgaceae"
275935 "Pseudomonadales" "Pseudomonadaceae"
339472 "Rhodospirillales" "Rhodospirillaceae"
508980 "Nitrospirales" "Thermodesulfovibrionaceae"
175045 "Cenarchaeales" "Cenarchaeaceae"
341275 NA NA
8389 "Pseudomonadales" "Moraxellaceae"
571389 "Syntrophobacterales" "Desulfobacteraceae"
223948 NA NA
239064 "Burkholderiales" "Comamonadaceae"
253651 "Actinomycetales" NA
236550 "Burkholderiales" "Oxalobacteraceae"
526081 "Clostridiales" "Lachnospiraceae"
511558 "Bdellovibrionales" "Bdellovibrionaceae"
26061 "Actinomycetales" "Actinomycetaceae"
164557 "Alteromonadales" "Alteromonadaceae"
71074 "Nitrososphaerales" "Nitrososphaeraceae"
148678 "Flavobacteriales" "Flavobacteriaceae"
356589 "Gallionellales" "Gallionellaceae"
16072 "Clostridiales" "Ruminococcaceae"
210791 "Sphingomonadales" "Sphingomonadaceae"
576850 "RF39" NA
12364 "Actinomycetales" "Intrasporangiaceae"
511687 "Sphingomonadales" "Sphingomonadaceae"
247518 NA NA
287763 "Bacteroidales" "Bacteroidaceae"
144921 "Actinomycetales" "Microbacteriaceae"
215890 "Clostridiales" "ClostridialesFamilyXIII.IncertaeSedis"
511371 "Legionellales" "Coxiellaceae"
278955 "Gemmatales" "Gemmataceae"
10857 "Syntrophobacterales" "Syntrophaceae"
509572 "SB-34" NA
236118 "NB1-j" "NB1-i"
100870 "Rhodobacterales" "Rhodobacteraceae"
137557 "Lactobacillales" "Enterococcaceae"
240686 "Rhodospirillales" "Rhodospirillaceae"
153026 "Sphingobacteriales" "Flexibacteraceae"
277196 "Clostridiales" "Lachnospiraceae"
279590 "Acidobacteriales" NA
470599 "Lactobacillales" "Lactobacillaceae"
550164 "Sphingobacteriales" "Flexibacteraceae"
72610 "Spirochaetales" "Spirochaetaceae"
550329 "Cryptophyta" NA
304950 NA NA
574226 "Actinomycetales" "Streptomycetaceae"
244496 "Spartobacteriales" "Spartobacteriaceae"
89337 "Actinomycetales" "Pseudonocardiaceae"
546723 "Legionellales" NA
212619 "Clostridiales" "Ruminococcaceae"
137099 "Verrucomicrobiales" NA
312030 "Oceanospirillales" "Alteromonadaceae"
296377 "Clostridiales" "Ruminococcaceae"
487725 "Sphingomonadales" "Sphingomonadaceae"
470823 "Bacteroidales" "Prevotellaceae"
546756 "Rhodocyclales" NA
160337 "Actinomycetales" "Frankiaceae"
556276 "Sphingobacteriales" NA
588981 "Actinomycetales" "Intrasporangiaceae"
306684 "Sphingobacteriales" NA
157866 "Bacillales" "Bacillaceae"
238929 "Verrucomicrobiales" NA
259028 "Pirellulales" NA
200064 "Pirellulales" NA
104310 "Actinomycetales" "Frankiaceae"
152720 "Actinomycetales" "Microbacteriaceae"
263307 "Rhodobacterales" "Rhodobacteraceae"
346253 "Clostridiales" NA
8096 "Methylococcales" NA
245050 "Bacteroidales" "Prevotellaceae"
286030 "Actinomycetales" "Nocardioidaceae"
100757 "Actinomycetales" "Thermomonosporaceae"
210865 "Rhodospirillales" "Rhodospirillaceae"
261709 "Actinomycetales" "Micrococcaceae"
10517 "Desulfovibrionales" "Desulfovibrionaceae"
113626 NA NA
240591 "Rhizobiales" "Phyllobacteriaceae"
88301 "Burkholderiales" "Oxalobacteraceae"
585355 "Clostridiales" "Peptococcaceae"
153762 "Cenarchaeales" "Cenarchaeaceae"
330803 "Flavobacteriales" "Flavobacteriaceae"
526490 "Clostridiales" NA
258502 "Clostridiales" "Dehalobacteriaceae"
70379 "EW055" NA
161544 "Acidimicrobiales" NA
181819 "Pseudomonadales" "Pseudomonadaceae"
292556 "Clostridiales" "Lachnospiraceae"
538794 "JH-WHS47" NA
341901 "Actinomycetales" "Nocardioidaceae"
185339 "Clostridiales" NA
547752 "Burkholderiales" "Burkholderiaceae"
510626 "Chromatiales" NA
140805 "Alteromonadales" "Pseudoalteromonadaceae"
565375 "Myxococcales" "Haliangiaceae"
534516 "HN1-15" NA
326644 "Clostridiales" "Lachnospiraceae"
332464 "Myxococcales" "Haliangiaceae"
578831 "Sphingobacteriales" NA
556231 "Rhodocyclales" NA
108870 "Rhizobiales" "Methylobacteriaceae"
167215 "Clostridiales" "Clostridiaceae"
343453 "Bacteroidales" "Prevotellaceae"
315848 "Oceanospirillales" "HTCC2188"
257176 "Acidimicrobiales" "EB1017"
329327 "Fibrobacterales" "Fibrobacteraceae"
292288 "Chromatiales" NA
213873 "Gemmatales" "Isosphaeraceae"
275402 "koll13" NA
563574 "Clostridiales" "Ruminococcaceae"
533036 "Pirellulales" NA
591098 NA NA
554003 NA NA
258006 NA NA
254841 "Sphingomonadales" "Sphingomonadaceae"
307569 "Clostridiales" "Lachnospiraceae"
102209 "Xanthomonadales" "Xanthomonadaceae"
114783 "Burkholderiales" NA
561842 NA NA
204177 "Myxococcales" "Haliangiaceae"
143463 NA NA
244840 "Pirellulales" "Pirellulaceae"
262115 NA NA
309328 NA NA
329074 NA NA
570930 "Clostridiales" NA
1718 "DS-18" NA
89763 "Solirubrobacterales" NA
212596 "Solibacterales" "Solibacteraceae"
100157 "Acidimicrobiales" "EB1017"
150577 "Rhizobiales" NA
291739 "Bacteroidales" NA
540283 NA NA
349780 "Chromatiales" "Ectothiorhodospiraceae"
166871 "Chromatiales" NA
171551 "Clostridiales" "Ruminococcaceae"
509511 "Rhodospirillales" "Acetobacteraceae"
329744 "Actinomycetales" "ACK-M1"
183985 "Clostridiales" "Ruminococcaceae"
204462 "Solibacterales" "Solibacteraceae"
165257 "Clostridiales" "Ruminococcaceae"
291710 "Clostridiales" "Lachnospiraceae"
88682 "Flavobacteriales" "Flavobacteriaceae"
6697 "Rhodocyclales" "Rhodocyclaceae"
136044 "Clostridiales" "Lachnospiraceae"
557121 "Methanomicrobiales" NA
143699 "Burkholderiales" NA
103157 "Oceanospirillales" "Alcanivoracaceae"
157625 "Clostridiales" NA
65695 NA NA
82548 "Sphingobacteriales" "Cyclobacteriaceae"
234044 "Burkholderiales" "Alcaligenaceae"
280233 NA NA
269778 "Oceanospirillales" "Alteromonadaceae"
589130 NA NA
521924 "SB-34" NA
165369 "NB1-j" NA
552779 "Bacteroidales" NA
224569 "Enterobacteriales" "Enterobacteriaceae"
471141 "Actinomycetales" "Micrococcaceae"
151439 NA NA
9510 "Pasteurellales" "Pasteurellaceae"
155970 "Verrucomicrobiales" NA
568881 "Syntrophobacterales" "Syntrophobacteraceae"
113959 NA NA
542003 "Flavobacteriales" "Flavobacteriaceae"
589802 "Solibacterales" "Solibacteraceae"
196433 "Vibrionales" "Vibrionaceae"
139752 "Oceanospirillales" "HTCC2188"
350732 "Clostridiales" "Lachnospiraceae"
298533 "Bacteroidales" "Prevotellaceae"
31334 "Bacillales" "Bacillaceae"
139641 "Oceanospirillales" "Halomonadaceae"
77467 "Syntrophobacterales" NA
593006 "Chromatiales" "Sinobacteraceae"
189485 "Clostridiales" "Lachnospiraceae"
69664 "Clostridiales" NA
136740 "Nitrospirales" "Nitrospiraceae"
25695 "Clostridiales" "Ruminococcaceae"
136925 "NB1-j" "MND4"
26036 "Clostridiales" "Peptococcaceae"
514272 "Clostridiales" "Lachnospiraceae"
588882 "Solibacterales" "Solibacteraceae"
101544 "Methylophilales" "Methylophilaceae"
2783 "Pirellulales" NA
218035 "Actinomycetales" "Microbacteriaceae"
581733 NA NA
266208 "Rhodospirillales" "Acetobacteraceae"
469382 "Flavobacteriales" "Flavobacteriaceae"
144746 "Oceanospirillales" "OM60"
138816 "Acidobacteriales" NA
577111 "Nitrospirales" "Thermodesulfovibrionaceae"
114978 "Rhizobiales" "Hyphomicrobiaceae"
154106 "Gemellales" "Gemellaceae"
521453 "Flavobacteriales" "Flavobacteriaceae"
10660 "Desulfuromonadales" "Desulfuromonadaceae"
162326 "Sphingobacteriales" NA
265749 "Rhodobacterales" "Rhodobacteraceae"
583500 "Clostridiales" "Lachnospiraceae"
273850 "Clostridiales" "Ruminococcaceae"
218005 "Bdellovibrionales" "Bacteriovoracaceae"
566717 "Bacillales" "Bacillaceae"
10113 "Enterobacteriales" "Enterobacteriaceae"
304270 "S0208" NA
137403 "Bacteroidales" NA
237003 "Clostridiales" "Ruminococcaceae"
512616 "Chromatiales" "Sinobacteraceae"
339015 "Burkholderiales" NA
136780 "MC47" NA
349277 "Actinomycetales" "Microbacteriaceae"
109792 "Clostridiales" NA
206278 NA NA
159246 "Pseudanabaenales" "Pseudanabaenaceae"
350731 "Clostridiales" "Ruminococcaceae"
588899 "Rhodospirillales" "Rhodospirillaceae"
305967 "Chromatiales" NA
591496 "Clostridiales" "Clostridiaceae"
233805 "Bacteroidales" "Rikenellaceae"
536009 "Oceanospirillales" "Alteromonadaceae"
142784 "Methylococcales" "Methylococcaceae"
295422 "Burkholderiales" "Alcaligenaceae"
558838 "Pseudomonadales" "Pseudomonadaceae"
113510 "Sphingobacteriales" "Flammeovirgaceae"
524765 "Pirellulales" NA
561594 "Lactobacillales" "Enterococcaceae"
161340 "Burkholderiales" "Comamonadaceae"
313166 "Bacteroidales" "Bacteroidaceae"
321885 "Gemmatales" "Gemmataceae"
163176 "Rhodocyclales" "Rhodocyclaceae"
328739 "Rhodospirillales" "Rhodospirillaceae"
268617 "Sphingobacteriales" NA
114029 NA NA
561793 NA NA
503327 "Actinomycetales" "Corynebacteriaceae"
172221 NA NA
93537 "Rhodobacterales" "Rhodobacteraceae"
261774 "Actinomycetales" "Corynebacteriaceae"
535000 "SHA-124" NA
541076 "Desulfuromonadales" "Geobacteraceae"
13662 "Clostridiales" "Peptococcaceae"
355680 "Burkholderiales" "Burkholderiaceae"
292073 "Clostridiales" "Lachnospiraceae"
202238 "Xanthomonadales" "Xanthomonadaceae"
112263 "Clostridiales" NA
541602 "Clostridiales" "Lachnospiraceae"
555446 "Rhodocyclales" NA
78316 "Rhodospirillales" "Rhodospirillaceae"
588740 NA NA
107184 "Rhodocyclales" "Rhodocyclaceae"
23870 "Actinomycetales" "Streptomycetaceae"
167365 "Clostridiales" "Lachnospiraceae"
184403 "Clostridiales" "Lachnospiraceae"
5552 "Caulobacterales" "Caulobacteraceae"
591182 "Arctic96B-7" "A714017"
576085 "Actinomycetales" "Thermomonosporaceae"
207832 "Bacillales" "Bacillaceae"
206632 "Spartobacteriales" "Spartobacteriaceae"
584265 NA NA
291610 "Clostridiales" "Ruminococcaceae"
239053 "Clostridiales" "Lachnospiraceae"
111986 NA NA
166835 "Burkholderiales" "Burkholderiaceae"
103589 "Oscillatoriales" NA
259270 "Erysipelotrichales" "Erysipelotrichaceae"
525569 "pGrfC26" NA
144091 "Sediment-1" "PRR-10"
583211 "Bacteroidales" NA
112752 "Rhodospirillales" "Acetobacteraceae"
548184 "Sphingobacteriales" "Sphingobacteriaceae"
193343 "Clostridiales" "Lachnospiraceae"
565944 "Chromatiales" NA
72374 "Enterobacteriales" "Enterobacteriaceae"
200049 "Pirellulales" NA
134207 "Clostridiales" "Veillonellaceae"
546975 NA NA
28512 "Acidobacteriales" NA
141423 "Methylococcales" "Crenotrichaceae"
238279 "Legionellales" "Legionellaceae"
570817 "Sphingomonadales" "Sphingomonadaceae"
319724 "Armatimonadales" "WD294"
242989 "Verrucomicrobiales" "Verrucomicrobiasubdivision3"
76933 "Myxococcales" "Haliangiaceae"
128051 "Actinomycetales" "Actinospicaceae"
265094 "Actinomycetales" "Micromonosporaceae"
13333 "Actinomycetales" "Williamsiaceae"
240228 NA NA
320879 "Actinomycetales" "Corynebacteriaceae"
276703 "Clostridiales" "Lachnospiraceae"
55727 "Sphingobacteriales" NA
162529 "Syntrophobacterales" "Desulfobacteraceae"
160135 "Actinomycetales" "Streptomycetaceae"
262464 "Flavobacteriales" "Flavobacteriaceae"
567145 "Gemmatales" "Gemmataceae"
342042 "Bacteroidales" "Marinilabiaceae"
542129 "Bacteroidales" NA
214380 "Clostridiales" "Ruminococcaceae"
254706 NA NA
533173 NA NA
258375 "Clostridiales" "Veillonellaceae"
527741 "Clostridiales" "Ruminococcaceae"
329313 "Clostridiales" "Lachnospiraceae"
342865 NA NA
97508 "Oceanospirillales" "OM60"
250451 "Solibacterales" "Solibacteraceae"
274500 "Hydrogenophilales" "Hydrogenophilaceae"
291764 "Clostridiales" "Lachnospiraceae"
42014 "Streptophyta" NA
257151 "Sphingobacteriales" NA
29284 "Actinomycetales" "Intrasporangiaceae"
519193 "Rhizobiales" "Phyllobacteriaceae"
560734 "Actinomycetales" NA
568172 "Mycoplasmatales" "Mycoplasmataceae"
574961 "Solibacterales" "Solibacteraceae"
139920 "Actinomycetales" "Dermacoccaceae"
334326 "Campylobacterales" "Campylobacteraceae"
328963 "Stramenopiles" NA
335530 "Bacteroidales" "Rikenellaceae"
139346 "Solibacterales" "Solibacteraceae"
554250 "Bacteroidales" NA
513639 "Pirellulales" "Pirellulaceae"
542353 "Pirellulales" NA
237324 "Clostridiales" "Lachnospiraceae"
1941 "Bacteroidales" "Porphyromonadaceae"
237963 "Myxococcales" NA
76142 "Actinomycetales" "Nakamurellaceae"
267568 "Oceanospirillales" NA
545503 "Rhodobacterales" "Rhodobacteraceae"
114455 "Bacteroidales" "Porphyromonadaceae"
261663 "AKYG885" "Dolo_23"
102382 "Burkholderiales" "Oxalobacteraceae"
278709 "envOPS12" NA
262658 "Clostridiales" "Ruminococcaceae"
558480 "Synechococcales" "Synechococcaceae"
152931 "Rhodospirillales" "Rhodospirillaceae"
68350 "Clostridiales" NA
259956 NA NA
556462 "Clostridiales" "Ruminococcaceae"
330861 "Streptophyta" NA
234421 "Clostridiales" "Lachnospiraceae"
535209 "Clostridiales" "Lachnospiraceae"
136145 "Synechococcales" "Chamaesiphonaceae"
588867 "Sphingobacteriales" "Flexibacteraceae"
91919 "Actinomycetales" "Nocardiopsaceae"
470527 "Lactobacillales" "Lactobacillaceae"
320847 "Bacteroidales" NA
215003 "Acidimicrobiales" NA
578409 "Clostridiales" "Clostridiaceae"
295754 "Clostridiales" "Lachnospiraceae"
340730 "Rhodospirillales" "Rhodospirillaceae"
272782 "Solibacterales" "Solibacteraceae"
272261 "Bacteroidales" NA
134929 "Syntrophobacterales" "Desulfobacteraceae"
78203 "Sphingobacteriales" "Sphingobacteriaceae"
248299 "MC47" NA
243335 "Rhodobacterales" "Rhodobacteraceae"
394191 "Neisseriales" "Neisseriaceae"
534609 "Rhodobacterales" "Rhodobacteraceae"
235390 "Burkholderiales" "Comamonadaceae"
98457 "Rhizobiales" "Hyphomicrobiaceae"
179213 "Pirellulales" NA
262076 "Sphingobacteriales" "Saprospiraceae"
279470 "Legionellales" "Coxiellaceae"
560842 "Clostridiales" "ClostridialesFamilyXI.IncertaeSedis"
247816 "Nostocales" "Nostocaceae"
182728 "Clostridiales" "Lachnospiraceae"
112749 NA NA
362373 "Oceanospirillales" "Halomonadaceae"
55799 "Enterobacteriales" "Enterobacteriaceae"
207982 NA NA
373357 "YS2" NA
539347 "Bacteroidales" "Prevotellaceae"
23777 "Desulfovibrionales" "Desulfomicrobiaceae"
278398 "Oceanospirillales" "OM60"
578828 "Burkholderiales" "Comamonadaceae"
36647 "Clostridiales" "Lachnospiraceae"
573761 "Oceanospirillales" "Alteromonadaceae"
197095 "Clostridiales" "Ruminococcaceae"
336539 "Clostridiales" "Lachnospiraceae"
573607 NA NA
2538 "Sphingobacteriales" "Saprospiraceae"
73076 "SHA-124" NA
257199 "Legionellales" "Legionellaceae"
298252 "Clostridiales" "Lachnospiraceae"
522087 "Bacteroidales" "Porphyromonadaceae"
50120 "Clostridiales" "Clostridiaceae"
537429 NA NA
548838 NA NA
343119 NA NA
362382 "Thiotrichales" "Francisellaceae"
239490 "Gemmatales" "Gemmataceae"
183122 "Sphingobacteriales" "Cyclobacteriaceae"
3581 "Fibrobacterales" "Fibrobacteraceae"
368027 "MC47" NA
70528 "Bacillales" "Bacillaceae"
97627 "Burkholderiales" "Comamonadaceae"
510817 "Clostridiales" "Ruminococcaceae"
86556 "Deinococcales" "Deinococcaceae"
305437 "Clostridiales" "Lachnospiraceae"
114292 "Sphingomonadales" "Sphingomonadaceae"
93610 "Xanthomonadales" "Xanthomonadaceae"
548077 "Acidimicrobiales" NA
133568 "Burkholderiales" "Oxalobacteraceae"
223711 "Rhizobiales" "Hyphomicrobiaceae"
192952 "Clostridiales" "Lachnospiraceae"
333279 "Clostridiales" "Lachnospiraceae"
296956 "Armatimonadales" "Armatimonadaceae"
115230 "Lactobacillales" "Enterococcaceae"
264558 "Streptophyta" NA
261919 NA NA
125536 "Oceanospirillales" "SUP05"
244674 "Myxococcales" NA
582971 "Nitrospirales" "Thermodesulfovibrionaceae"
361304 "Bacteroidales" "Bacteroidaceae"
88335 "Solirubrobacterales" NA
198740 "Clostridiales" "Lachnospiraceae"
544430 "Chlamydiales" "Parachlamydiaceae"
269355 "Sphingobacteriales" "Flexibacteraceae"
512598 NA NA
182894 "Coriobacteriales" "Coriobacteriaceae"
533078 "Caldilineales" "Caldilineaceae"
516971 "Oceanospirillales" "Oceanospirillaceae"
369734 "Rhodospirillales" "Rhodospirillaceae"
222914 "Verrucomicrobiales" "Verrucomicrobiasubdivision3"
471308 "Lactobacillales" "Lactobacillaceae"
583669 "Oceanospirillales" "211ds20"
36624 "Clostridiales" "Lachnospiraceae"
13069 "Actinomycetales" "Mycobacteriaceae"
538805 "Clostridiales" "Ruminococcaceae"
193576 "Clostridiales" "Lachnospiraceae"
511119 "Bacteroidales" NA
522127 "GN09" NA
580835 "Flavobacteriales" "Flavobacteriaceae"
579000 "Clostridiales" "Ruminococcaceae"
91532 "Rhodospirillales" "Rhodospirillaceae"
470724 "Neisseriales" "Neisseriaceae"
236430 "Sphingobacteriales" NA
322045 "Burkholderiales" "Oxalobacteraceae"
314793 "Syntrophobacterales" "Desulfobacteraceae"
272602 "RF39" NA
553285 NA NA
228762 "Clostridiales" "Lachnospiraceae"
590547 "Clostridiales" "Ruminococcaceae"
454435 "Legionellales" "Legionellaceae"
103639 "Syntrophobacterales" "Desulfobacteraceae"
269075 "Pirellulales" NA
203691 "Bifidobacteriales" "Bifidobacteriaceae"
229514 "Solibacterales" "Solibacteraceae"
352654 "Pirellulales" NA
248442 "Oceanospirillales" "OM60"
306610 "Campylobacterales" "Helicobacteraceae"
292521 "Bifidobacteriales" "Bifidobacteriaceae"
279083 "Pseudanabaenales" "Pseudanabaenaceae"
333775 "Clostridiales" "Lachnospiraceae"
588604 "Rhodospirillales" "Rhodospirillaceae"
572242 "Gemmatales" "Gemmataceae"
201720 NA NA
544325 "Bacteroidales" NA
239291 "Verrucomicrobiales" "Verrucomicrobiaceae"
345211 "Clostridiales" "Lachnospiraceae"
582509 "Pirellulales" NA
241853 "Bdellovibrionales" "Bacteriovoracaceae"
106480 "SB-45" NA
205713 "Rhizobiales" "Rhizobiaceae"
322112 "Clostridiales" NA
63221 "Nitrospirales" "Thermodesulfovibrionaceae"
Genus Species
338272 NA NA
289855 NA NA
287759 NA NA
334839 NA NA
144065 NA NA
18643 "Mariprofundus" NA
218985 NA NA
238997 "CandidatusSolibacter" NA
245893 NA NA
131765 "Porphyromonas" NA
536982 "T78" NA
351629 "Lysobacter" NA
321069 NA NA
512157 NA NA
193230 NA NA
107461 NA NA
329570 NA NA
35881 NA NA
260458 "Deinococcus" NA
279132 NA NA
548884 NA NA
288119 NA NA
192899 "Blautia" NA
531589 NA NA
90465 "Spirochaeta" "Spirochaetaaurantia"
556145 "Algoriphagus" NA
542118 NA NA
513763 NA NA
344513 NA NA
141836 NA NA
129783 NA NA
198528 "Clostridium" NA
258229 NA NA
70461 NA NA
303295 NA NA
313089 NA NA
254133 NA NA
276351 NA NA
275935 "Pseudomonas" "Pseudomonasmendocina"
339472 NA NA
508980 "LCP-6" NA
175045 "Nitrosopumilus" NA
341275 NA NA
8389 "Acinetobacter" "Acinetobacterjohnsonii"
571389 NA NA
223948 NA NA
239064 "Brachymonas" NA
253651 NA NA
236550 "Massilia" "Massiliatimonae"
526081 "Oribacterium" NA
511558 "Bdellovibrio" NA
26061 "Actinomyces" NA
164557 "Glaciecola" NA
71074 "CandidatusNitrososphaera" "SCA1145"
148678 NA NA
356589 "Gallionella" NA
16072 NA NA
210791 "Sphingobium" NA
576850 NA NA
12364 "Terracoccus" NA
511687 "Novosphingobium" "Novosphingobiumstygium"
247518 NA NA
287763 "Bacteroides" NA
144921 "Microcella" NA
215890 "Anaerovorax" NA
511371 NA NA
278955 "Gemmata" NA
10857 "Syntrophus" "Syntrophussp."
509572 NA NA
236118 NA NA
100870 "Loktanella" NA
137557 "Enterococcus" "Enterococcusinusitatus"
240686 "Novispirillum" "Novospirillumitersonii"
153026 "Runella" NA
277196 NA NA
279590 NA NA
470599 "Lactobacillus" "Lactobacillusiners"
550164 "Cytophaga" NA
72610 "Treponema" NA
550329 NA NA
304950 NA NA
574226 "Streptacidiphilus" NA
244496 "CandidatusXiphinematobacter" NA
89337 "Actinoalloteichus" NA
546723 NA NA
212619 NA NA
137099 NA NA
312030 "HTCC2207" NA
296377 NA NA
487725 "Sphingomonas" NA
470823 "Prevotella" NA
546756 NA NA
160337 NA NA
556276 NA NA
588981 "Terracoccus" NA
306684 NA NA
157866 "Bacillus" NA
238929 NA NA
259028 NA NA
200064 NA NA
104310 NA NA
152720 "Microbacterium" NA
263307 NA NA
346253 NA NA
8096 NA NA
245050 "Prevotella" NA
286030 "Nocardioides" NA
100757 "Actinomadura" "Actinomadurarubrobrunea"
210865 NA NA
261709 "Arthrobacter" NA
10517 "Bilophila" "Bilophilawadsworthia"
113626 NA NA
240591 NA NA
88301 "Massilia" "Massiliatimonae"
585355 NA NA
153762 "Cenarchaeum" NA
330803 NA NA
526490 NA NA
258502 "Dehalobacterium" NA
70379 NA NA
161544 NA NA
181819 "Pseudomonas" NA
292556 NA NA
538794 NA NA
341901 NA NA
185339 NA NA
547752 "Burkholderia" NA
510626 NA NA
140805 "Pseudoalteromonas" NA
565375 NA NA
534516 NA NA
326644 "Clostridium" NA
332464 NA NA
578831 "Niabella" NA
556231 NA NA
108870 "Methylobacterium" NA
167215 NA NA
343453 "Prevotella" NA
315848 "HTCC" NA
257176 NA NA
329327 "Fibrobacter" "Fibrobactersuccinogenes"
292288 NA NA
213873 NA NA
275402 NA NA
563574 "Ruminococcus" "Ruminococcusflavefaciens"
533036 NA NA
591098 NA NA
554003 NA NA
258006 NA NA
254841 "Sphingomonas" NA
307569 NA NA
102209 NA NA
114783 "Rubrivivax" "Rubrivivaxgelatinosus"
561842 NA NA
204177 NA NA
143463 NA NA
244840 "Pirellula" NA
262115 NA NA
309328 NA NA
329074 NA NA
570930 NA NA
1718 NA NA
89763 NA NA
212596 "CandidatusSolibacter" NA
100157 NA NA
150577 NA NA
291739 NA NA
540283 NA NA
349780 NA NA
166871 NA NA
171551 "Faecalibacterium" "Faecalibacteriumprausnitzii"
509511 NA NA
329744 NA NA
183985 NA NA
204462 "CandidatusSolibacter" NA
165257 NA NA
291710 "Epulopiscium" NA
88682 NA NA
6697 "Azonexus" "Azonexusfungiphilus"
136044 "Eubacterium" NA
557121 "Methanosphaerula" "Methanosphaerulapalustris"
143699 NA NA
103157 NA NA
157625 NA NA
65695 NA NA
82548 "Algoriphagus" NA
234044 "Achromobacter" NA
280233 NA NA
269778 "Spongiibacter" NA
589130 NA NA
521924 NA NA
165369 NA NA
552779 NA NA
224569 NA NA
471141 "Rothia" "Rothiamucilaginosa"
151439 NA NA
9510 NA NA
155970 NA NA
568881 NA NA
113959 NA NA
542003 "Tenacibaculum" NA
589802 "CandidatusSolibacter" NA
196433 "Vibrio" NA
139752 NA NA
350732 NA NA
298533 "Prevotella" NA
31334 NA NA
139641 "Halomonas" NA
77467 NA NA
593006 NA NA
189485 "Coprococcus" NA
69664 NA NA
136740 "Nitrospira" NA
25695 NA NA
136925 NA NA
26036 "Desulfosporosinus" "Desulfosporosinusmeridiei"
514272 "Coprococcus" NA
588882 "CandidatusSolibacter" NA
101544 NA NA
2783 "Rhodopirellula" NA
218035 NA NA
581733 NA NA
266208 "Acidocella" NA
469382 "Flavobacterium" NA
144746 NA NA
138816 NA NA
577111 "LCP-6" NA
114978 "Hyphomicrobium" NA
154106 "Gemella" "Gemellasanguinis"
521453 NA NA
10660 "Desulfuromusa" NA
162326 NA NA
265749 NA NA
583500 "Clostridium" NA
273850 NA NA
218005 NA NA
566717 "Bacillus" NA
10113 NA NA
304270 NA NA
137403 NA NA
237003 "Eubacterium" NA
512616 NA NA
339015 "Tepidimonas" NA
136780 NA NA
349277 "Microbacterium" "Microbacteriumaurum"
109792 NA NA
206278 NA NA
159246 "Leptolyngbya" NA
350731 NA NA
588899 NA NA
305967 NA NA
591496 "Clostridium" NA
233805 NA NA
536009 "Marinobacter" "Marinobactermobilis"
142784 "Methylomonas" NA
295422 "Sutterella" NA
558838 "Pseudomonas" NA
113510 NA NA
524765 NA NA
561594 "Enterococcus" "Enterococcusasini"
161340 "Rhodoferax" NA
313166 "Bacteroides" NA
321885 NA NA
163176 "Methyloversatilis" NA
328739 NA NA
268617 NA NA
114029 NA NA
561793 NA NA
503327 "Corynebacterium" NA
172221 NA NA
93537 "Loktanella" "Loktanellavestfoldensis"
261774 "Corynebacterium" NA
535000 NA NA
541076 "Geobacter" NA
13662 "Pelotomaculum" NA
355680 NA NA
292073 "Ruminococcus" NA
202238 "Stenotrophomonas" NA
112263 NA NA
541602 "Roseburia" NA
555446 NA NA
78316 "Magnetospirillum" "Magnetospirillumsp."
588740 NA NA
107184 "Methyloversatilis" NA
23870 "Streptomyces" NA
167365 "Clostridium" NA
184403 NA NA
5552 "Phenylobacterium" NA
591182 "ZA3312c" NA
576085 "Actinomadura" "Actinomaduravinacea"
207832 NA NA
206632 "MC18" NA
584265 NA NA
291610 NA NA
239053 "Clostridium" NA
111986 NA NA
166835 "Burkholderia" NA
103589 NA NA
259270 "p-75-a5" NA
525569 NA NA
144091 NA NA
583211 NA NA
112752 NA NA
548184 NA NA
193343 "Roseburia" "Eubacteriumrectale"
565944 NA NA
72374 "Buttiauxella" "Buttiauxellaagrestis"
200049 NA NA
134207 "Thermosinus" NA
546975 NA NA
28512 NA NA
141423 "Crenothrix" NA
238279 "Tatlockia" NA
570817 "Sphingomonas" NA
319724 NA NA
242989 NA NA
76933 NA NA
128051 NA NA
265094 "Micromonospora" "Micromonosporacarbonacea"
13333 "Williamsia" NA
240228 NA NA
320879 NA NA
276703 "Eubacterium" NA
55727 NA NA
162529 NA NA
160135 "Streptomyces" NA
262464 "Chryseobacterium" NA
567145 NA NA
342042 NA NA
542129 NA NA
214380 NA NA
254706 NA NA
533173 NA NA
258375 "Dialister" NA
527741 "Faecalibacterium" NA
329313 "Roseburia" NA
342865 "CandidatusAmoebophilus" "CandidatusAmoebophilusasiaticus"
97508 NA NA
250451 "CandidatusSolibacter" NA
274500 "Thiobacillus" NA
291764 NA NA
42014 NA NA
257151 NA NA
29284 "Tetrasphaera" "Tetrasphaerajenkinsii"
519193 NA NA
560734 NA NA
568172 NA NA
574961 "CandidatusSolibacter" NA
139920 "Dermacoccus" NA
334326 "Arcobacter" NA
328963 NA NA
335530 "Alistipes" NA
139346 "CandidatusSolibacter" NA
554250 NA NA
513639 "A17" NA
542353 "Rhodopirellula" NA
237324 "Clostridium" NA
1941 "Porphyromonas" NA
237963 NA NA
76142 NA NA
267568 NA NA
545503 NA NA
114455 "Dysgonomonas" NA
261663 NA NA
102382 "Massilia" "Massiliatimonae"
278709 NA NA
262658 NA NA
558480 "Prochlorococcus" NA
152931 NA NA
68350 NA NA
259956 NA NA
556462 NA NA
330861 NA NA
234421 "Ruminococcus" NA
535209 NA NA
136145 NA "Chamaesiphonsubglobosus"
588867 NA NA
91919 "Nocardiopsis" NA
470527 "Lactobacillus" NA
320847 NA NA
215003 NA NA
578409 "Clostridium" NA
295754 "Clostridium" NA
340730 NA NA
272782 "CandidatusSolibacter" NA
272261 NA NA
134929 NA NA
78203 NA NA
248299 NA NA
243335 "Loktanella" NA
394191 "Simonsiella" NA
534609 NA NA
235390 NA NA
98457 "Rhodoplanes" NA
179213 NA NA
262076 NA NA
279470 NA NA
560842 "Tissierella" NA
247816 "Trichormus" "Trichormusvariabilis"
182728 "Blautia" NA
112749 NA NA
362373 "Halomonas" NA
55799 NA NA
207982 NA NA
373357 NA NA
539347 "Prevotella" NA
23777 "Desulfomicrobium" "Desulfomicrobiumorale"
278398 NA NA
578828 "Alicycliphilus" NA
36647 NA NA
573761 "Microbulbifer" NA
197095 "Oscillospira" NA
336539 NA NA
573607 NA NA
2538 NA NA
73076 NA NA
257199 "Legionella" NA
298252 "Butyrivibrio" NA
522087 "Parabacteroides" NA
50120 "Clostridium" NA
537429 NA NA
548838 NA NA
343119 NA NA
362382 "Francisella" NA
239490 NA NA
183122 "Echinicola" NA
3581 "Fibrobacter" "Fibrobactersuccinogenes"
368027 NA NA
70528 "Bacillus" NA
97627 "Hylemonella" NA
510817 NA NA
86556 "Deinococcus" NA
305437 "Lachnobacterium" NA
114292 "Kaistobacter" NA
93610 "Luteimonas" NA
548077 NA NA
133568 NA NA
223711 "Devosia" NA
192952 NA NA
333279 "Roseburia" NA
296956 NA NA
115230 "Vagococcus" "Vagococcuslutrae"
264558 NA NA
261919 NA NA
125536 NA NA
244674 NA NA
582971 "LCP-6" NA
361304 "Bacteroides" NA
88335 NA NA
198740 "Eubacterium" NA
544430 "Parachlamydia" "Parachlamydiaacanthamoebae"
269355 "Spirosoma" NA
512598 NA NA
182894 "Adlercreutzia" NA
533078 "Caldilinea" NA
516971 NA NA
369734 NA NA
222914 NA NA
471308 "Lactobacillus" "Lactobacillussalivarius"
583669 NA NA
36624 NA NA
13069 "Mycobacterium" NA
538805 NA NA
193576 "Clostridium" NA
511119 NA NA
522127 NA NA
580835 "Tenacibaculum" NA
579000 NA NA
91532 NA NA
470724 "Neisseria" "Neisserialactamica"
236430 NA NA
322045 "Massilia" "Massiliatimonae"
314793 NA NA
272602 NA NA
553285 NA NA
228762 "Clostridium" NA
590547 NA NA
454435 "Legionella" NA
103639 NA NA
269075 "Rhodopirellula" NA
203691 NA NA
229514 "CandidatusSolibacter" NA
352654 "Rhodopirellula" NA
248442 NA NA
306610 "Sulfurimonas" NA
292521 "Bifidobacterium" NA
279083 "Leptolyngbya" NA
333775 "Clostridium" NA
588604 NA NA
572242 NA NA
201720 NA NA
544325 NA NA
239291 "Luteolibacter" NA
345211 "Coprococcus" NA
582509 NA NA
241853 "Bacteriovorax" NA
106480 NA NA
205713 "Rhizobium" NA
322112 NA NA
63221 "LCP-6" NA
Warning message:
system call failed: Cannot allocate memory
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