Biocview "GeneticVariability"

A Genotype Calling Algorithm for Affymetrix SNP Arrays
A lecture on sequence count data
Analysing Illumina HumanMethylation BeadChip Data
Analysing Illumina HumanMethylation BeadChip Data
Analysing Illumina HumanMethylation BeadChip Data
analysis of co-regulatory network motifs and inference of 'dual regulons'.
analysis of co-regulatory network motifs and inference of 'dual regulons'.
analysis of co-regulatory network motifs and inference of 'dual regulons'.
An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples
An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples
An R package to identify multi-snp effects in nuclear family studies using the GADGETS method
A package to test genetic association with CNV data
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV
BBCAnalyzer: an R/Bioconductor package for visualizing base counts
Bioconductor components for general cancer genomics
Bioconductor components for general cancer genomics
Computational pipeline for computing probability of modification from structure probing experiment data
Computational pipeline for computing probability of modification from structure probing experiment data
Cross omic genetic fingerprinting
Cross omic genetic fingerprinting
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients
Detection of subclonal SNVs in deep sequencing data.
Detection of subclonal SNVs in deep sequencing data.
Detection of subclonal SNVs in deep sequencing data.
Dual redundant reference sequencing
Dual redundant reference sequencing
Epistasis Analysis for Quantitative Traits by Functional Regression Model
Error correction tool for noisy genotyping by sequencing (GBS) data
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
Find Specificity Groups with GLIPH and GLIPH2 Method
Functions to help analyze data as phyloseq objects
Functions to help analyze data as phyloseq objects
Gene Set Regulation (GS-Reg)
Gene Set Regulation (GS-Reg)
Gene Set Regulation (GS-Reg)
genesis assocation testing code rewrite
genesis assocation testing code rewrite
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
Genotyping and QTL Mapping in DO Mice
Genotyping and QTL Mapping in DO Mice
gin in R
gin in R
GWAS Incorporating Networks
GWAS Incorporating Networks
gwasurvivr: an R package for genome wide survival analysis
gwasurvivr: an R package for genome wide survival analysis
gwasurvivr: an R package for genome wide survival analysis
Handling and analysis of high-throughput microbiome census data
Handling and analysis of high-throughput microbiome census data
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data
Infers clonal composition of a tumor
Integrative Statistics of alleLe Dependent Expression
Integrative Statistics of alleLe Dependent Expression
MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data
Mapping, quantification and variant analysis of sequencing data
Mean Alterations Using Discrete Expression
Metabarcoding and microbiome analysis using multiple amplicons
Methods to Find Pathways with Significantly Different Variability
Methods to Find Pathways with Significantly Different Variability
Microbiome Exploration App
Microbiome Exploration App
Normalization and reporting of Illumina SNP bead arrays
Perform Chromosomal Ancestry Differences (CAnD) Analyses
Preprocessing and Analysis of Deep Mutational Scanning Data
Quasispecies Diversity
Quasispecies Diversity
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for RIVER (RNA-Informed Variant Effect on Regulation)
RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
Seamless visualization of complex genomic variations in GMOs and edited cell lines
Single Nucleotide Polymorphisms Linkage Disequilibrium Visualizations
SnpMatrix and XSnpMatrix classes and methods
SnpMatrix and XSnpMatrix classes and methods
software and data for analyses in genetics of gene expression
Statistical analysis for sparse high-throughput sequencing
Statistical analysis for sparse high-throughput sequencing
Statistical Inference of Associations between Microbial Communities And host phenoTypes
Statistical Inference of Associations between Microbial Communities And host phenoTypes
Statistical Inference of Associations between Microbial Communities And host phenoTypes
Testing of SNPs and SNP Interactions in Case-Parent Trio Studies
The 'snp.matrix' and 'X.snp.matrix' Classes
Tools for counting and visualising mutations in a target location
Tools for counting and visualising mutations in a target location
Tools for counting and visualising mutations in a target location
Tools for Exploratory Analysis of Variant Calls
Tools for Exploratory Analysis of Variant Calls
Tools for Genome Wide Association Studies
Tools for Genome Wide Association Studies
Tools for Genome Wide Association Studies
Tools for Testing Gene-Gene Interaction at the Gene Level
Tools for variant data
Tools for variant data
Transcriptional Regulatory Inference from Genetics of Gene ExpRession
Transcriptional Regulatory Inference from Genetics of Gene ExpRession
Transcriptional Regulatory Inference from Genetics of Gene ExpRession
TVTB: The VCF Tool Box
TVTB: The VCF Tool Box
Visualizations for copy number alterations