MPIIComputationalEpigenetics/MAGAR: MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data
"Methylation-Aware Genotype Association in R" (MAGAR) computes methQTL from DNA methylation and genotyping data from matched samples. MAGAR uses a linear modeling stragety to call CpGs/SNPs that are methQTLs. MAGAR accounts for the local correlation structure of CpGs.
Getting started
Browse package contents
Package details |
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| Bioconductor views | BatchEffect Clustering CopyNumberVariation CpGIsland DNAMethylation DataImport DifferentialMethylation Epigenetics GeneticVariability GraphAndNetwork ImmunoOncology MethylSeq MethylationArray Microarray Network Preprocessing QualityControl Regression SNP Sequencing TwoChannel mRNAMicroarray |
| Maintainer | |
| License | GPL-3 |
| Version | 1.11.0 |
| URL | https://github.com/MPIIComputationalEpigenetics/MAGAR |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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