MPIIComputationalEpigenetics/MAGAR: MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data

"Methylation-Aware Genotype Association in R" (MAGAR) computes methQTL from DNA methylation and genotyping data from matched samples. MAGAR uses a linear modeling stragety to call CpGs/SNPs that are methQTLs. MAGAR accounts for the local correlation structure of CpGs.

Getting started

Package details

Bioconductor views BatchEffect Clustering CopyNumberVariation CpGIsland DNAMethylation DataImport DifferentialMethylation Epigenetics GeneticVariability GraphAndNetwork ImmunoOncology MethylSeq MethylationArray Microarray Network Preprocessing QualityControl Regression SNP Sequencing TwoChannel mRNAMicroarray
Maintainer
LicenseGPL-3
Version0.99.10
URL https://github.com/MPIIComputationalEpigenetics/MAGAR
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("MPIIComputationalEpigenetics/MAGAR")
MPIIComputationalEpigenetics/MAGAR documentation built on March 31, 2021, 3:39 a.m.