qtlManhattanPlot: qtlManhattanPlot

In MPIIComputationalEpigenetics/MAGAR: MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data

qtlManhattanPlot

Description

This function creates a manhattan plot for the given methQTL result

Usage

qtlManhattanPlot(meth.qtl.result, type = "CpG", stat = "p.val.adj.fdr")

Arguments

meth.qtl.result	An object of type MethQTLResult-class containing the methQTL
type	Determines if either the CpG (default) or the SNP is to be visualized
stat	Determines the statistic that is to be visualized. Can be either P.value, Beta or p.val.adj.fdr

Details

A plot is shown that contains chromosome-wise interactions.

Value

None

Author(s)

Michael Scherer

Examples

meth.qtl.res <- loadMethQTLResult(system.file("extdata","MethQTLResult_chr18",package="MAGAR"))
qtlManhattanPlot(meth.qtl.res)

MPIIComputationalEpigenetics/MAGAR documentation built on Nov. 10, 2023, 4:16 p.m.