getGeno: getGeno
In MPIIComputationalEpigenetics/MAGAR: MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data
getGeno,MethQTLInput-method R Documentation
getGeno
Description
Returns genotyping information for the given dataset.
Usage
## S4 method for signature 'MethQTLInput'
getGeno(object, site = NULL, sample = NULL)
Arguments
object
An object of class MethQTLInput-class.
site
The sites to be selected either as a numeric or logical vector. If NULL all sites are returned.
sample
The samples to be selected either as a numeric or logical vector. If NULL all samples are returned.
Value
The genotyping matrix either as a matrix of HDF5Matrix.
Examples
meth.qtl <- loadMethQTLInput(system.file("extdata","reduced_methQTL",package="MAGAR"))
head(getGeno(meth.qtl))
MPIIComputationalEpigenetics/MAGAR documentation built on Nov. 16, 2024, 11:25 p.m.
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| getGeno,MethQTLInput-method | R Documentation |
getGeno
Description
Returns genotyping information for the given dataset.
Usage
## S4 method for signature 'MethQTLInput'
getGeno(object, site = NULL, sample = NULL)
Arguments
object |
An object of class |
site |
The sites to be selected either as a numeric or logical vector. If |
sample |
The samples to be selected either as a numeric or logical vector. If |
Value
The genotyping matrix either as a matrix of HDF5Matrix.
Examples
meth.qtl <- loadMethQTLInput(system.file("extdata","reduced_methQTL",package="MAGAR"))
head(getGeno(meth.qtl))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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