getGeno: getGeno

In MPIIComputationalEpigenetics/MAGAR: MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data

getGeno

Description

Returns genotyping information for the given dataset.

Usage

## S4 method for signature 'MethQTLInput'
getGeno(object, site = NULL, sample = NULL)

Arguments

object	An object of class MethQTLInput-class.
site	The sites to be selected either as a numeric or logical vector. If NULL all sites are returned.
sample	The samples to be selected either as a numeric or logical vector. If NULL all samples are returned.

Value

The genotyping matrix either as a matrix of HDF5Matrix.

Examples

meth.qtl <- loadMethQTLInput(system.file("extdata","reduced_methQTL",package="MAGAR"))
head(getGeno(meth.qtl))

MPIIComputationalEpigenetics/MAGAR documentation built on Dec. 6, 2024, 2:30 p.m.