getAnno: getAnno

In MPIIComputationalEpigenetics/MAGAR: MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data

getAnno

Description

Returns genomic annotation information for the given dataset.

Usage

## S4 method for signature 'MethQTLInput'
getAnno(object, type = "meth")

## S4 method for signature 'MethQTLResult'
getAnno(object, type = "meth")

Arguments

object	An object of class MethQTLInput-class or MethQTLResult-class.
type	The type of annotation to be returned. Can either be 'meth' or 'geno' for methylation, and genotyping information, respectively.

Value

The genomic annotation as a data.frame.

Examples

meth.qtl <- loadMethQTLInput(system.file("extdata","reduced_methQTL",package="MAGAR"))
head(getAnno(meth.qtl,"meth"))
head(getAnno(meth.qtl,"geno"))
meth.qtl.res <- loadMethQTLResult(system.file("extdata","MethQTLResult_chr18",package="MAGAR"))
head(getAnno(meth.qtl.res,"meth"))
head(getAnno(meth.qtl.res,"geno"))

MPIIComputationalEpigenetics/MAGAR documentation built on Nov. 16, 2024, 11:25 p.m.