overlapQTLs: overlapQTLs

In MPIIComputationalEpigenetics/MAGAR: MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data

overlapQTLs

Description

This function overlaps a list of methQTLs to determine which interactions are common.

Usage

overlapQTLs(meth.qtl.result.list, type)

Arguments

meth.qtl.result.list	A named list with each entry being an object of type MethQTLResult-class. The names are used in the visualization.
type	Determines if either the SNP (default), the CpG, or the correlation block 'cor.block' is to be visualized

Value

A list with length(meth.qtl.result.list) elements, containing IDs of methQTL interactions according to the option type.

Author(s)

Michael Scherer

Examples

meth.qtl.res.1 <- loadMethQTLResult(system.file("extdata","MethQTLResult_chr18",package="MAGAR"))
meth.qtl.res.2 <- meth.qtl.res.1
res <- overlapQTLs(list(A=meth.qtl.res.1,B=meth.qtl.res.2),type="SNP")

MPIIComputationalEpigenetics/MAGAR documentation built on Nov. 10, 2023, 4:16 p.m.