qtlDistanceScatterplot: qtlDistanceScatterplot
In MPIIComputationalEpigenetics/MAGAR: MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data
qtlDistanceScatterplot R Documentation
qtlDistanceScatterplot
Description
Computes a scatterplot between CpG-SNP distance with both effect size and p-value
Usage
qtlDistanceScatterplot(meth.qtl.result, out.dir = NULL, out.name = NULL)
Arguments
meth.qtl.result
An object of type MethQTLResult-class containing called methQTL
out.dir
If specified, the plot is stored as a pdf in this directory
out.name
Optional name for the resulting plot
Value
An object of type ggplot comparing the distance between CpG and SNP. Negative values indicate that the
SNP is downstream of the CpG.
Author(s)
Michael Scherer
Examples
meth.qtl.res <- loadMethQTLResult(system.file("extdata","MethQTLResult_chr18",package="MAGAR"))
qtlDistanceScatterplot(meth.qtl.res)
MPIIComputationalEpigenetics/MAGAR documentation built on April 29, 2024, 1:09 a.m.
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| qtlDistanceScatterplot | R Documentation |
qtlDistanceScatterplot
Description
Computes a scatterplot between CpG-SNP distance with both effect size and p-value
Usage
qtlDistanceScatterplot(meth.qtl.result, out.dir = NULL, out.name = NULL)
Arguments
meth.qtl.result |
An object of type |
out.dir |
If specified, the plot is stored as a pdf in this directory |
out.name |
Optional name for the resulting plot |
Value
An object of type ggplot comparing the distance between CpG and SNP. Negative values indicate that the
SNP is downstream of the CpG.
Author(s)
Michael Scherer
Examples
meth.qtl.res <- loadMethQTLResult(system.file("extdata","MethQTLResult_chr18",package="MAGAR"))
qtlDistanceScatterplot(meth.qtl.res)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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