getResultGWASMap: getResultGWASMap

In MPIIComputationalEpigenetics/MAGAR: MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data

getResultGWASMap

Description

Returns the methQTL results in the format used as input to GWAS-map and stores in the object.

Usage

## S4 method for signature 'MethQTLResult'
getResultGWASMap(object, meth.qtl)

Arguments

object	An of type MethQTLResult-class.
meth.qtl	An object of type MethQTLInput-class containing further information about the QTLs

Value

The methQTL results as a data.frame with each row being a methQTL.

Examples

meth.qtl.res <- loadMethQTLResult(system.file("extdata","MethQTLResult_chr18",package="MAGAR"))
meth.qtl <- loadMethQTLInput(system.file("extdata","reduced_methQTL",package="MAGAR"))
head(getResultGWASMap(meth.qtl.res,meth.qtl))

MPIIComputationalEpigenetics/MAGAR documentation built on Nov. 10, 2023, 4:16 p.m.