qtlUpsetPlot: qtlUpsetPlot

In MPIIComputationalEpigenetics/MAGAR: MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data

qtlUpsetPlot

Description

This function creates an UpSet plot from the given methQTL results

Usage

qtlUpsetPlot(meth.qtl.result.list, type = "SNP", ...)

Arguments

meth.qtl.result.list	A named list with each entry being an object of type MethQTLResult-class. The names are used in the visualization.
type	Determines if either the SNP (default), the CpG, or the correlation block 'cor.block' is to be visualized
...	Further argument passed to upset

Details

The plot is directly drawn and can be stored on disk using the known R graphic devices

Value

None

Author(s)

Michael Scherer

Examples

meth.qtl.res.1 <- loadMethQTLResult(system.file("extdata","MethQTLResult_chr18",package="MAGAR"))
meth.qtl.res.2 <- meth.qtl.res.1
qtlUpsetPlot(list(A=meth.qtl.res.1,B=meth.qtl.res.2))

MPIIComputationalEpigenetics/MAGAR documentation built on Dec. 6, 2024, 2:30 p.m.