getResult: getResult

In MPIIComputationalEpigenetics/MAGAR: MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data

getResult

Description

Returns the methQTL results stores in the object.

Usage

## S4 method for signature 'MethQTLResult'
getResult(object, cor.blocks = NULL, na.rm = FALSE)

Arguments

object	An of type MethQTLResult-class.
cor.blocks	Correlation blocks as obtained using getCorrelationBlocks. Please note that the correlation blocks need to contain the CpG identifiers, so the MethQTLInput-class object needs to be provided to getCorrelationBlocks.
na.rm	Flag indicating if rows containing NA values are to be removed from the result.

Value

The methQTL results as a data.frame with each row being a methQTL.

Examples

meth.qtl.res <- loadMethQTLResult(system.file("extdata","MethQTLResult_chr18",package="MAGAR"))
head(getResult(meth.qtl.res))

MPIIComputationalEpigenetics/MAGAR documentation built on Nov. 10, 2023, 4:16 p.m.