Biocview "SNP"

Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization
Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization
A Genetic-Based Assay for the Identification of Cell Lines
A Genotype Calling Algorithm for Affymetrix SNP Arrays
A Genotype Calling Algorithm for Affymetrix SNP Arrays
Analysis of Large Affymetrix Microarray Data Sets
Analysis of Large Affymetrix Microarray Data Sets
Analysis of Parent-Specific DNA Copy Numbers
Analysis of Parent-Specific DNA Copy Numbers
Analytical Tools for MassArray Data
Analytical Tools for MassArray Data
Ancestry Specific Allele Frequency Estimation
Ancestry Specific Allele Frequency Estimation
Ancestry Specific Allele Frequency Estimation
Annotation of Genetic Variants
Annotation of Genetic Variants
Annotation of Genetic Variants
An R package for analysis of case-control studies in genetic epidemiology
An R package for analysis of case-control studies in genetic epidemiology
An R package for computing the number of susceptibility SNPs
An R package for computing the number of susceptibility SNPs
A Package for De Novo CNV Detection in Case-Parent Trios
A Package for De Novo CNV Detection in Case-Parent Trios
A package for variant peptides detection and visualization in shotgun proteomics.
A package for variant peptides detection and visualization in shotgun proteomics.
A RangedSummarizedExperiment with methods for copy number analysis
A RangedSummarizedExperiment with methods for copy number analysis
Asessing statistical significance in predictive GWA studies
Asessing statistical significance in predictive GWA studies
Bayesian Piecewise Constant Regression for DNA copy number estimation
Bayesian Piecewise Constant Regression for DNA copy number estimation
BBCAnalyzer: an R/Bioconductor package for visualizing base counts
BBCAnalyzer: an R/Bioconductor package for visualizing base counts
Candidate gene prioritization based on convergent evidence
Candidate gene prioritization based on convergent evidence
Candidate gene prioritization based on convergent evidence
Candidate gene prioritization based on convergent evidence
Candidate gene prioritization based on convergent evidence
CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.
CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.
Copy-Number Analysis of Large Microarray Data Sets
Copy-Number Analysis of Large Microarray Data Sets
data structures for linkage disequilibrium measures in populations
data structures for linkage disequilibrium measures in populations
Detecting SNPs with interactive effects on a quantitative trait
Detecting SNPs with interactive effects on a quantitative trait
Detection of subclonal SNVs in deep sequencing data.
Detection of subclonal SNVs in deep sequencing data.
Detection of subclonal SNVs in deep sequencing data.
Detection of subclonal SNVs in deep sequencing data.
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
Exposome and omic data associatin and integration
Filtering of coding and non-coding genetic variants
Filtering of coding and non-coding genetic variants
Filtering of coding and non-coding genetic variants
Find SNV/Indel differences between two bam files with near relationship
Find SNV/Indel differences between two bam files with near relationship
GEM: fast association study for the interplay of Gene, Environment and Methylation
GEM: fast association study for the interplay of Gene, Environment and Methylation
GEM: fast association study for the interplay of Gene, Environment and Methylation
GEM: fast association study for the interplay of Gene, Environment and Methylation
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search
GeneRegionScan
GeneRegionScan
Genetic Algorithms for Understanding Clonal Heterogeneity and Ordering
Genetic Algorithms for Understanding Clonal Heterogeneity and Ordering
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
Genotype Conditional Association TEST
Genotype Conditional Association TEST
Genotype Conditional Association TEST
Genotyping and QTL Mapping in DO Mice
Genotyping and QTL Mapping in DO Mice
Genotyping and QTL Mapping in DO Mice
Get inversion status in predefined regions
Get inversion status in predefined regions
gQTLBase: infrastructure for eQTL, mQTL and similar studies
gQTLBase: infrastructure for eQTL, mQTL and similar studies
gQTLstats: computationally efficient analysis for eQTL and allied studies
gQTLstats: computationally efficient analysis for eQTL and allied studies
GWAS-based Mendelian Randomization and Path Analyses
GWAS-based Mendelian Randomization and Path Analyses
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data
High-Throughput Sequence Analysis using the Aroma Framework
iASeq: integrating multiple sequencing datasets for detecting allele-specific events
iASeq: integrating multiple sequencing datasets for detecting allele-specific events
Identification of candidate genes associated with genetic variation
Identification of candidate genes associated with genetic variation
Identification of candidate genes associated with genetic variation
Identification of genetic Variants affecting Alternative Splicing
Identification of genetic Variants affecting Alternative Splicing
Identification of SNP Interactions
Identification of SNP Interactions
Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
Infrastructure for Biostrings-based genome data packages
Infrastructure for Biostrings-based genome data packages and support for efficient SNP representation
Infrastructure for Biostrings-based genome data packages and support for efficient SNP representation
integrated Bayesian Modeling of eQTL data
integrated Bayesian Modeling of eQTL data
integrated Bayesian Modeling of eQTL data
Integrative analysis of Multi-omics data for Alternative Splicing
Integrative analysis of Multi-omics data for Alternative Splicing
Integrative analysis of Multi-omics data for Alternative Splicing
Integrative Statistics of alleLe Dependent Expression
Integrative Statistics of alleLe Dependent Expression
Inversions in genotype data
Inversions in genotype data
Logistic Factor Analysis for Categorical Data
Logistic Factor Analysis for Categorical Data
Logistic Factor Analysis for Categorical Data
Metabolomic Quantitative Trait Locus Mapping for 1H NMR data
Metabolomic Quantitative Trait Locus Mapping for 1H NMR data
Multiple testing using SAM and Efron's empirical Bayes approaches
Multiple testing using SAM and Efron's empirical Bayes approaches
Normalization and reporting of Illumina SNP bead arrays
Normalization and reporting of Illumina SNP bead arrays
Objective Assessment of Copy-Number Estimates
Optimal Pvalue Weighting
Parallel implmentation of bounded memory GEE
Perform Chromosomal Ancestry Differences (CAnD) Analyses
Perform Chromosomal Ancestry Differences (CAnD) Analyses
Post-normalization of total copy numbers
Post-normalization of total copy numbers
Preprocessing tools for oligonucleotide arrays
Preprocessing tools for oligonucleotide arrays
Preprocessing tools for oligonucleotide arrays
Preprocessing tools for oligonucleotide arrays.
QA/QC of a gVCF or VCF file
QA/QC of a gVCF or VCF file
Query data from SNPedia
Query data from SNPedia
Reconstruction of transcriptional networks and analysis of master regulators
Reconstruction of transcriptional networks and analysis of master regulators
Representation and manipulation of short genomic alignments
Representation and manipulation of short genomic alignments
R Interface to Ensembl Variant Effect Predictor
R Interface to Ensembl Variant Effect Predictor
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for RIVER (RNA-Informed Variant Effect on Regulation)
Segmentation of single- and multi-track copy number data by penalized least squares regression.
Segmentation of single- and multi-track copy number data by penalized least squares regression.
SnpMatrix and XSnpMatrix classes and methods
SnpMatrix and XSnpMatrix classes and methods
SnpMatrix and XSnpMatrix classes and methods
software and data for analyses in genetics of gene expression
software and data for analyses in genetics of gene expression
Subread sequence alignment for R
Subread sequence alignment for R
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Canonical Correlation Analysis
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Canonical Correlation Analysis
systemPipeRdata: NGS workflow templates and sample data
systemPipeR: NGS workflow and report generation environment
systemPipeR: NGS workflow and report generation environment
Testing of SNPs and SNP Interactions in Case-Parent Trio Studies
Testing of SNPs and SNP Interactions in Case-Parent Trio Studies
Testing of SNPs and SNP Interactions in Case-Parent Trio Studies
The snp.matrix and X.snp.matrix classes
The snp.matrix and X.snp.matrix classes
Tools for Genome Wide Association Studies
Tools for Genome Wide Association Studies
Tools for Sanger Sequencing Data in R
Tools for Sanger Sequencing Data in R
Tools for Testing Gene-Gene Interaction at the Gene Level
Tools for Testing Gene-Gene Interaction at the Gene Level
Tools for Testing Gene-Gene Interaction at the Gene Level
Tools for variant data
Tools for variant data
Transcriptional Regulatory Inference from Genetics of Gene ExpRession
Transcriptional Regulatory Inference from Genetics of Gene ExpRession
Transcriptional Regulatory Inference from Genetics of Gene ExpRession
Visualizations for copy number alterations
Visualizations for copy number alterations