IVAS: Identification of genetic Variants affecting Alternative Splicing

Identification of genetic variants affecting alternative splicing.

Author
Seonggyun Han, Sangsoo Kim
Date of publication
None
Maintainer
Seonggyun Han <hangost@ssu.ac.kr>
License
GPL-2
Version
1.6.0

View on Bioconductor

Man pages

calSignificant
Calculates P.values by using two statistical models.
chrseparate
Separate a TranscriptDb object based on a chromosome.
findAlternative
Find alternative exons of a gene.
findOversnp
Find SNPs which belongs to alternative exons and flanking...
IVAS-package
IVAS : Identification of genomic variants affecting...
MsqtlFinder
Find SQTLs in multiple genes.
sampleexp
CEU expression data
samplesnp
CEU genotype data
samplesnplocus
snplocus
saveBplot
Save boxplots
sqtlfinder
Find SQTLs.

Files in this package

IVAS/DESCRIPTION
IVAS/NAMESPACE
IVAS/NEWS
IVAS/R
IVAS/R/MsqtlFinder.R
IVAS/R/calSignificant.R
IVAS/R/chrseparate.R
IVAS/R/findAlternative.R
IVAS/R/findOversnp.R
IVAS/R/saveBplot.R
IVAS/R/sqtlfinder.R
IVAS/build
IVAS/build/vignette.rds
IVAS/data
IVAS/data/sampleexp.rda
IVAS/data/samplesnp.rda
IVAS/data/samplesnplocus.rda
IVAS/inst
IVAS/inst/doc
IVAS/inst/doc/IVAS.R
IVAS/inst/doc/IVAS.Rnw
IVAS/inst/doc/IVAS.pdf
IVAS/inst/extdata
IVAS/inst/extdata/sampleDB
IVAS/man
IVAS/man/IVAS-package.Rd
IVAS/man/MsqtlFinder.Rd
IVAS/man/calSignificant.Rd
IVAS/man/chrseparate.Rd
IVAS/man/findAlternative.Rd
IVAS/man/findOversnp.Rd
IVAS/man/sampleexp.Rd
IVAS/man/samplesnp.Rd
IVAS/man/samplesnplocus.Rd
IVAS/man/saveBplot.Rd
IVAS/man/sqtlfinder.Rd
IVAS/vignettes
IVAS/vignettes/IVAS.Rnw