IVAS: Identification of genetic Variants affecting Alternative Splicing
Version 1.96.0

Identification of genetic variants affecting alternative splicing.

Browse man pages Browse package API and functions Browse package files

AuthorSeonggyun Han, Sangsoo Kim
Bioconductor views AlternativeSplicing DifferentialExpression DifferentialSplicing GeneExpression GeneRegulation RNASeq Regression SNP Sequencing Software Transcription
Date of publicationNone
MaintainerSeonggyun Han <hangost@ssu.ac.kr>
LicenseGPL-2
Version1.96.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("IVAS")

Man pages

ASdb-class: ASdb s4 class - a container for results from functions of the...
calSignificant: Deprecated
CalSigSNP: Calculate significance SNPs
chrseparate: Separate a TxDb object based on a chromosome.
findAlternative: Find alternative exons of a gene.
findOversnp: Find SNPs which belong to alternative exons and flanking...
IVAS-deprecated: Deprecated functions in package 'IVAS'
IVAS-package: IVAS : Identification of genomic variants affecting...
MsqtlFinder: Deprecated
RatioFromFPKM: Estimate relative expression ratio.
sampleexp: CEU expression data
samplesnp: CEU genotype data
samplesnplocus: snplocus
saveBplot: Save boxplots
Splicingfinder: Find alternatively spliced exons
sqtlfinder: Deprecated
sQTLsFinder: Find SQTLs.

Functions

ASdb-class Man page
CalSigSNP Man page Source code
IVAS Man page
IVAS-deprecated Man page
IVAS-package Man page
MsqtlFinder Man page Source code
RatioFromFPKM Man page Source code
Splicingfinder Man page Source code
calSignificant Man page Source code
chrseparate Man page Source code
findAlternative Man page Source code
findOversnp Man page Source code
sQTLsFinder Man page Source code
sampleexp Man page
samplesnp Man page
samplesnplocus Man page
saveBplot Man page Source code
sqtlfinder Man page Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/ASdb-class.R
R/CalSigSNP.R
R/MsqtlFinder.R
R/RatioFromFPKM.R
R/Splicingfinder.R
R/calSignificant.R
R/chrseparate.R
R/findAlternative.R
R/findOversnp.R
R/sQTLsFinder.R
R/saveBplot.R
R/sqtlfinder.R
build
build/vignette.rds
data
data/sampleexp.rda
data/samplesnp.rda
data/samplesnplocus.rda
inst
inst/CITATION
inst/doc
inst/doc/IVAS.R
inst/doc/IVAS.Rnw
inst/doc/IVAS.pdf
inst/extdata
inst/extdata/sampleDB
man
man/ASdb-class.Rd
man/CalSigSNP.Rd
man/IVAS-deprecated.Rd
man/IVAS-package.Rd
man/MsqtlFinder.Rd
man/RatioFromFPKM.Rd
man/Splicingfinder.Rd
man/calSignificant.Rd
man/chrseparate.Rd
man/findAlternative.Rd
man/findOversnp.Rd
man/sQTLsFinder.Rd
man/sampleexp.Rd
man/samplesnp.Rd
man/samplesnplocus.Rd
man/saveBplot.Rd
man/sqtlfinder.Rd
vignettes
vignettes/IVAS.Rnw
IVAS documentation built on May 20, 2017, 10:15 p.m.