Biocview "Transcription"

A Framework for visualizing gene set enrichment throughout neurodevelopment
A Framework for visualizing gene set enrichment throughout neurodevelopment
A Functional Approach To Impute Genetically Regulated Expression
A Functional Approach To Impute Genetically Regulated Expression
alpine
alpine
alternative CDF environments (aka probeset mappings)
Analysis for short time-series data
Analysis for short time-series data
Analysis for short time-series data
Analysis of alternative splicing using RNA-Seq
Analysis of alternative splicing using RNA-Seq
Analysis of Alternative Splicing Using RNA-Seq
Analysis of Alternative Splicing Using RNA-Seq
Analysis of amplicon enrichment panels
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor
Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor
Analysis of Large Affymetrix Microarray Data Sets
Analysis of Large Affymetrix Microarray Data Sets
Analysis of Transposable Elements
AnaLysis routines for ePigenomicS data
AnaLysis routines for ePigenomicS data
Analysis Tools for scATACseq Data with CoGAPS
Analyze Transcription Factor Enrichment
Analyze Transcription Factor Enrichment
An effective identification of alternative splicing events using junction arrays and RNA-Seq data
An effective identification of alternative splicing events using junction arrays and RNA-Seq data
An Evolutionary Framework for the Identification and Study of Prognostic Gene Expression Signatures in Cancer
An Evolutionary Framework for the Identification and Study of Prognostic Gene Expression Signatures in Cancer
An Evolutionary Framework for the Identification and Study of Prognostic Gene Expression Signatures in Cancer
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification
annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions
An R package estimates the correlations of orthologs and transposable elements between two species
An R package facilitating analysis of RNA modifications, structures, and interactions
An R package facilitating analysis of RNA modifications, structures, and interactions
An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples
An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
An R package for the easy provision of simple but complete tab-delimited genomic annotation from a variety of sources and organisms
An R package to detect chromatin state switches from epigenomic data
An R package to detect chromatin state switches from epigenomic data
An R package to detect chromatin state switches from epigenomic data
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
A package for discriminative motif discovery, designed for high throughput sequencing dataset
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites
A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language
ArrayAnalysis
A search tool for single cell RNA-seq data by gene lists
A search tool for single cell RNA-seq data by gene lists
A shiny user interface for rTRM
ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events
ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events
Assess Differential Gene Expression Experiments with ERCC Controls
Assess Differential Gene Expression Experiments with ERCC Controls
Assess Differential Gene Expression Experiments with ERCC Controls
Assess Differential Gene Expression Experiments with ERCC Controls
Assessing the regulatory potential of DNA methylation regions or sites on gene transcription
Assessing the regulatory potential of DNA methylation regions or sites on gene transcription
Assessment of evidence for LOH in spatial transcriptomics pre-processed data using Bayes factor calculations
A SummarizedExperiment for Ivy-GAP data
A SummarizedExperiment for Ivy-GAP data
A Tidy Transcriptomics introduction to RNA-Seq analyses
A tool for unsupervised projection of single cell RNA-seq data
A tool for unsupervised projection of single cell RNA-seq data
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
Automated functions for comparing various omic data from cbioportal.org
Automated functions for comparing various omic data from cbioportal.org
Automated functions for comparing various omic data from cbioportal.org
A web interface for gene-set enrichment analyses
BANDITS: Bayesian ANalysis of DIfferenTial Splicing
BANDITS: Bayesian ANalysis of DIfferenTial Splicing
Base NanoString Experiment Class
Bayesian Analysis of Chip-chip experiment
Bayesian Inference of Regulation of Transcriptional Activity
Bayesian Inference of Regulatory Influence on Expression (biRte)
Bias-free Footprint Enrichment Test
Bias-free Footprint Enrichment Test
Biclustering Analysis and Results Exploration
Big multivariate data plotted interactively
Bioconductor components for general cancer genomics
Bioconductor components for general cancer genomics
BioTIP: An R package for characterization of Biological Tipping-Point
BioTIP: An R package for characterization of Biological Tipping-Point
BioTIP: An R package for characterization of Biological Tipping-Point
Brings Seurat to the Tidyverse
Brings Seurat to the Tidyverse
Brings SingleCellExperiment to the Tidyverse
Brings SummarizedExperiment to the Tidyverse
Brings SummarizedExperiment to the Tidyverse
Brings SummarizedExperiment to the Tidyverse
Brings transcriptomics to the tidyverse
Brings transcriptomics to the tidyverse
Brings transcriptomics to the tidyverse
Brings transcriptomics to the tidyverse
ceRNAR: An R Package for Identification and Analysis of ceRNAs-miRNA Triplets
Characterization of Alternative Splicing based on Paired-End Reads
ChIPanalyser: Predicting Transcription Factor Binding Sites
ChIPanalyser: Predicting Transcription Factor Binding Sites
ChIPanalyser: Predicting Transcription Factor Binding Sites
ChIPexoQual
ChIPexoQual
ChIP-Seq data scaling according to spike-in control
ChIP-Seq data scaling according to spike-in control
CircRNA transcriptome assembly tool
Classification of alternative splicing and prediction of coding potential from RNA-seq data.
Classify Samples From RNA-Seq Datasets
Clustering of Time Series Gene Expression data
Clustering of Time Series Gene Expression data
Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis
Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis
Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis
Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis
Colocalization analysis of transcriptome elements in the presence of isoform heterogeneity and ambiguity
Combination Connectivity Mapping
Combination Connectivity Mapping
CommunityAMARETTO: A Computational Tool for the Discovery of Shared and Distinct Regulatory Mechanisms Across Biological Systems
Comparative Evaluation and Visualization of Differential Expression Analyses
Computational pipeline for computing probability of modification from structure probing experiment data
Computational pipeline for computing probability of modification from structure probing experiment data
Computes the Quaternary Dot Product Scoring Statistic for Signed and Unsigned Causal Graphs
Context-Aware Transcript Quantification from Long Read RNA-Seq data
Coordinated Gene Activity in Pattern Sets
Coordinated Gene Activity in Pattern Sets
CoRegFlux
CoRegFlux
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
Cross omic genetic fingerprinting
Cross omic genetic fingerprinting
Cross Platform Meta-Analysis of Microarray Data
Cross Platform Meta-Analysis of Microarray Data
Data-driven Annotation of the Transcriptome
Data for the alpine package vignette
Data Package for the annoFuse Bioconductor Package
Decomposing Heterogeneous Cohorts using Omic Data Profiling
Decomposing Heterogeneous Cohorts using Omic Data Profiling
decoupleR: Ensemble of computational methods to infer biological activities from omics data
Delineate outstanding genomic zones of differential gene activity
Delineate outstanding genomic zones of differential gene activity
Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges
Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges
Determination of essential phenotypic elements of clusters in high-dimensional entities
Determination of essential phenotypic elements of clusters in high-dimensional entities
dgeAnalysis
dgeAnalysis
Differential Binding of Transcription Factor with ChIP-seq
Differential cell-type-specific allelic imbalance
Differential Co-expression Analysis
Differential Co-expression Analysis
Differential Expression Analysis for RNA-seq data through a robust variance component test
Differential gene expression analysis based on the negative binomial distribution
Differential gene expression analysis based on the negative binomial distribution
Differential Gene Expression Analysis for Multi-subject scRNA-seq
Differential Gene Expression Analysis for Multi-subject scRNA-seq
Differential gene expression data formats converter
Differential gene expression data formats converter
Differentially Expressed Gene-Gene pairs
Differentially regulated genes from scRNA-seq data
Discriminant Analysis for Evolutionary Inference
Discriminant Analysis for Evolutionary Inference
distinct: a method for differential analyses via hierarchical permutation tests
dPeak (Deconvolution of Peaks in ChIP-seq Analysis)
dPeak (Deconvolution of Peaks in ChIP-seq Analysis)
DtracePLN: Sparse precision matrix estimation via lasso penalized D-trace loss in the multivariate Poisson log-normal model
Dynamic Transcriptome Analysis
DynaMO predicts spatiotemporal binding of transcription factors
Empirical Analysis of Digital Gene Expression Data in R
Empirical Analysis of Digital Gene Expression Data in R
Empirical Analysis of Digital Gene Expression Data in R
Empirical RNA-seq Sample Size Analysis
Empirical RNA-seq Sample Size Analysis
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis
Enrichment Approach to Predict Which Transcription Factors are Regulated
Estimate Promoter Activity from RNA-Seq data
Estimate Promoter Activity from RNA-Seq data
Estimate Systems Immune Response from RNA-seq data
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
EWCE for Multiple Gene Lists
Exon-Intron Split Analysis (EISA) in R
Exon-Intron Split Analysis (EISA) in R
Expression Weighted Celltype Enrichment
Expression Weighted Celltype Enrichment
Fast Permutation-based Gene Set Analysis
Fast Permutation-based Gene Set Analysis
Find Causal Cell-Types Underlying Complex Trait Genetics
Find Causal Cell-Types Underlying Complex Trait Genetics
Fishpond: differential transcript and gene expression with inferential replicates
Fishpond: downstream methods and tools for expression data
Fit transcriptional regulatory networks using gene expression, priors, machine learning
Fit transcriptional regulatory networks using gene expression, priors, machine learning
Fit transcriptional regulatory networks using gene expression, priors, machine learning
Fit transcriptional regulatory networks using gene expression, priors, machine learning
Fit transcriptional regulatory networks using gene expression, priors, machine learning
functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets
functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets
Functional Network Analysis
Functional Network Analysis
Functions for analyzing SELEX-seq data
Gene Ontology analyser for RNA-seq and other length biased data
Gene Ontology analyser for RNA-seq and other length biased data
Gene Ontology analyser for RNA-seq and other length biased data
Gene Ontology analyser for RNA-seq and other length biased data
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search
Generate customized protein databases from NGS data for proteomics search
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results
Gene regulator enrichment analysis
Gene regulator enrichment analysis
Gene Set Enrichment Analysis Extended to Contingency Cubes
GeneSet objects from ChIP-Seq experiments
Gene Set Regulation Index
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.
GRaNIE: Reconstruction cell type specific gene regulatory networks including enhancers using chromatin accessibility and RNA-seq data
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation
GUI for limma Package with Affymetrix Microarrays
Guitar
Guitar
Hidden Variable Dynamic Modeling
Higher-Order Deconvolution Survival Analyses
High-Throughput Sequence Analysis using the Aroma Framework
Identification and classification of plant transcription factors
Identification of enriched motif pairs from chromatin interaction data
Identification of genetic Variants affecting Alternative Splicing
Identification of transcriptional regulatory modules from PPI networks
Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data
Identify differential APA usage from RNA-seq alignments
Identify differential APA usage from RNA-seq alignments
Identifying Differential Effects in Tiling Microarray Data
Identify Novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data
Identify Novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data
ILoReg: a tool for high-resolution cell population identification from scRNA-Seq data
ILoReg: a tool for high-resolution cell population identification from scRNA-Seq data
ILoReg: a tool for high-resolution cell population identification from scRNA-Seq data
ImagingAMARETTO: tools for interpreting multi-omics networks for relevance to clinical outcomes and radiographic and histopathology imaging-derived biomarkers
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Inference of gene regulatory networks from gene expression data
Inference on agreement between ordered lists
Inference on agreement between ordered lists
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes
InPAS: a bioconductor package for the identification of novel alternative PolyAdenylation Sites (PAS) using RNA-seq data
Integrating Cap Enrichment with Transcript Expression Analysis
Integrating Cap Enrichment with Transcript Expression Analysis
Integrative analysis of Multi-omics data for Alternative Splicing
Integrative analysis of Multi-omics data for Alternative Splicing
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection
Integrative Statistics of alleLe Dependent Expression
Integrative Statistics of alleLe Dependent Expression
Interactive SummarizedExperiment Explorer
Interactive SummarizedExperiment Explorer
Interactive SummarizedExperiment Explorer
Interactive SummarizedExperiment Explorer
Interactive visualization of scRNA-seq data with Cerebro
Introduction to Tidy Transcriptomics
Introduction to Tidy Transcriptomics
Introduction to Tidy Transcriptomics
Introduction to Tidy Transcriptomics
Introduction to Tidy Transcriptomics
Introduction to Tidy Transcriptomics
Introduction to Tidy Transcriptomics
Introduction to Tidy Transcriptomics
iSEE Universe
iSEE Universe
iSEE Universe
iSMNN: Batch Effect Correction for Single-cell RNA-seq data via Iterative Supervised Mutual Nearest Neighbor Refinement
Linear model and normality based normalization and transformation method (Linnorm)
Linear Models for Microarray Data
Linear Models for Microarray Data
LPEseq: local-pooled-error test for RNA-seq data with a small number of replicates
LPEseq: local-pooled-error test for RNA-seq data with a small number of replicates
m6Aexpress-BHM: Predicting m6A regulation of gene expression in multiple-groups context by a Bayesian Hierarchical Mixture model
Make read coverage plots from BigWig files
Make read coverage plots from BigWig files
Mapping protein-DNA interactions in highly repetitive regions of the genomes with prior-enhanced read mapping
Mapping protein-DNA interactions in highly repetitive regions of the genomes with prior-enhanced read mapping
Maximum Likelihood Decay Modeling of RNA Degradation Data
Maximum Likelihood Decay Modeling of RNA Degradation Data
Mean Alterations Using Discrete Expression
Minimized Single-Cell Consensus Clustering
Minimized Single-Cell Consensus Clustering
miRDriver: A Tool to Infer Copy Number Derived miRNA-Gene Networks in Cancer
Modeling Network State Transitions from Expression and Regulatory data (MONSTER)
Modeling Network State Transitions from Expression and Regulatory data (MONSTER)
Monte Carlo Reference-based Consensus Clustering
Monte Carlo Reference-based Consensus Clustering
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
Multiomic Batch effect Correction
Multiomic Batch effect Correction
Multiple Beta t-Tests
Multiple Beta t-Tests
Multi-Scale Target Explorer
Multivariate Analysis of Transcriptomic Data
Multivariate Analysis of Transcriptomic Data
Multivariate Analysis of Transcriptomic Data
Multivariate Analysis of Transcriptomic Data
NanoString GeoMx Tools
NanoString nCounter Tools
Negative Binomial Beta t-Test
NEUral network-based single-Cell Annotation tool
Outlier Analysis for pairwise differential comparison
Outlier Analysis for pairwise differential comparison
Outlier Analysis for pairwise differential comparison
Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection
PANDA Algorithm
PANDA Algorithm
PANDA Algorithm
PANDA Algorithm
PatchseqMap
Pathway-based data integration of omics data
Pathway-based data integration of omics data
Pathway-based data integration of omics data
Pathway fingerprinting for analysis of gene expression arrays
Pathway fingerprinting for analysis of gene expression arrays
PCAtools: Everything Principal Components Analysis
PCAtools: Everything Principal Components Analysis
Perform co-DE gene analysis
PLNet: Sparse precision matrix estimation via lasso penalized D-trace loss in the multivariate Poisson log-normal model
PLNet: Sparse precision matrix estimation via lasso penalized D-trace loss in the multivariate Poisson log-normal model
Predict Combined Function of Transcription Factors
Predicting context-specific m6A regulation of gene expression
Predicting context-specific m6A regulation of gene expression
Predicting context-specific m6A regulation of gene expression combinding m6A reader binding information
Prediction of pri-miRNA Transcription Start Site
Prediction of pri-miRNA Transcription Start Site
Probabilistic Outlier Identification for RNA Sequencing Generalized Linear Models
Probabilistic Outlier Identification for RNA Sequencing Generalized Linear Models
Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays
Promoter identification from large-scale TSS profiling data
Promoter identification from large-scale TSS profiling data
Publication-ready volcano plots with enhanced colouring and labeling
Publication-ready volcano plots with enhanced colouring and labeling
Quality Control of Normalized Gene Expression Data
Quantification of the Tumor Immune contexture from RNA-seq data
Quantitative comparison of multiple ChIP-seq datasets
R-based analysis of ChIP-seq And Differential Expression - a tool for integrating a count-based ChIP-seq analysis with differential expression summary data
R-based analysis of ChIP-seq And Differential Expression - a tool for integrating a count-based ChIP-seq analysis with differential expression summary data
RcisTarget: Identify transcription factor binding motifs enriched on a gene list
RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions
Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets
Reference-guided isoform reconstruction and quantification for long read RNA-Seq data
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression
regutools: an R package for data extraction from RegulonDB
R functions for the normalization of Exiqon miRNA array data
RNA-binding protein motif analysis
RNA-binding protein motif analysis
RNA-Seq multi-mapping Reads Quantification Tool
rnaSeq secondary analyses
RNA-Seq Utilities
RNA-Seq Utilities
R package for analysing TFBSs in DNA sequences
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for RIVER (RNA-Informed Variant Effect on Regulation)
RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons
SAFE-clustering:Single-cell Aggregated (From Ensemble) Clustering for Single-cell RNA-seq Data
SAME: Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble for Single-cell RNA-seq Data
scDataviz: single cell dataviz and downstream analyses
scDataviz: single cell dataviz and downstream analyses
scDataviz: single cell dataviz and downstream analyses
scRMD: Imputation for single cell RNA-seq data via robust matrix decomposition
scRMD: Imputation for single cell RNA-seq data via robust matrix decomposition
Segvis: A package for visualization of high throughput sequencing data along genomic segments
Shape-based Analysis of Variation in ChIP-seq using Functional PCA
sigFeature: Significant feature selection using SVM-RFE & t-statistic
sigFeature: Significant feature selection using SVM-RFE & t-statistic
Single-Cell Consensus Clustering
Single-Cell Consensus Clustering
Single Cell Differential Expression
Single Cell Differential Expression
Single Cell Inference of Regulatory Activity
Single-Cell RNA-Seq Utilities
Single-Cell RNA-Seq Utilities
Single Cell Shiny Application for Analysing Single Cell Transcriptomics Data
SMNN: Batch Effect Correction for Single-cell RNA-seq data with Supervised Mutual Nearest Neighbor Detection
Software Package for Transcription Factor Binding Site (TFBS) Analysis
Software Package for Transcription Factor Binding Site (TFBS) Analysis
Sparse Partial Correlations On Gene Expression
Sparse Partial Correlations On Gene Expression
Sparse Partial Correlations On Gene Expression
Spatial Overlay for Omic Data from Nanostring GeoMx Data
Splice event prediction and quantification from RNA-seq data
Splice event prediction and quantification from RNA-seq data
splicegear
Statistical tools for the analysis of ChIP-seq data
Statistical Utility for RBP (RNA binding protein) Functions
Subsampling of high-throughput sequencing count data
Subsampling of high-throughput sequencing count data
Supervised Normalization of Microarrays
Supervised Normalization of Microarrays
Systems EPigenomics Inference of Regulatory Activity
Systems EPigenomics Inference of Regulatory Activity
TFregulomeR reveals transcription factors’ context-specific features and functions
TFregulomeR reveals transcription factors’ context-specific features and functions
TFregulomeR reveals transcription factors’ context-specific features and functions
The Genomic STate ANnotation Package
The removal of batch effects from datasets using a PCA and constrained optimisation based technique
The removal of batch effects from datasets using a PCA and constrained optimisation based technique
The tidyomics blog
The tidyomics blog
Tidy Transcriptomics for Single-cell RNA Sequencing Analyses
Tool for Evaluation of Cell Identity from Transcription Profiles
Tool for Evaluation of Cell Identity from Transcription Profiles
Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data
Tools for the Efficient Analysis of High-Resolution Genomics Data
Tools for the Efficient Analysis of High-Resolution Genomics Data
Transcript expression inference and differential expression analysis for RNA-seq data
Transcriptional analysis based on transcriptograms
Transcriptional analysis based on transcriptograms
Transcription Factor High Accumulation Zones
Transcription Factor High Accumulation Zones
Transcription factor Inference through Gaussian process Reconstruction of Expression
Transcription factor Inference through Gaussian process Reconstruction of Expression
Transcription Factors Association Rules Miner
Transcription Factors Association Rules Miner
Transcription Factors Association Rules Miner
Transcription Factors Enrichment Analysis
Transcription Factors Enrichment Analysis
Transcriptome-guided quality assessment of m6A-seq data
Transcript Quantification Import with Automatic Metadata
Transcript Quantification Import with Automatic Metadata
Translational control assessment from ribosome footprint and total RNA libraries
tricycle: Transferable Representation and Inference of cell cycle
TSS sequencing data analysis
Unified methods for the inference and analysis of gene regulatory networks
Unified Statistal Modeling of Omics Data
Unified Statistal Modeling of Omics Data
Unlocking iSEE for transcript-level visualization
Very simple high level analysis of Affymetrix data
Visualise microarray and RNAseq data using gene ontology annotations
Visualise microarray and RNAseq data using gene ontology annotations
Visualise microarray and RNAseq data using gene ontology annotations
Visualise microarray and RNAseq data using gene ontology annotations
What the Package Does TODOELI