federicomarini/GeneTonic: Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis

This package provides functionality to combine the existing pieces of the transcriptome data and results, making it easier to generate insightful observations and hypothesis. Its usage is made easy with a Shiny application, combining the benefits of interactivity and reproducibility e.g. by capturing the features and gene sets of interest highlighted during the live session, and creating an HTML report as an artifact where text, code, and output coexist. Using the GeneTonicList as a standardized container for all the required components, it is possible to simplify the generation of multiple visualizations and summaries.

Getting started

Package details

Bioconductor views Annotation DifferentialExpression GO GUI GeneExpression GeneSetEnrichment Pathways ReportWriting ShinyApps Software Transcription Transcriptomics Visualization
LicenseMIT + file LICENSE
URL https://github.com/federicomarini/GeneTonic
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
federicomarini/GeneTonic documentation built on Aug. 20, 2023, 5:13 p.m.