Biocview "GO"

AmiGO visualize R interface
Annotation and gene expression data retrieval from Bgee database
Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology
Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology
Annotation for microarrays
Annotation for microarrays
Annotation tools for Affymetrix biological metadata
An R interface to the Ontology Lookup Service
An R interface to the Ontology Lookup Service
An R Package for Unbiased Splicing Pathway Analysis
An R Package for Unbiased Splicing Pathway Analysis in RNAseq data
An R pipeline for .bed file annotation, comparing GO term enrichment between gene sets and data visualisation
An R pipeline for .bed file annotation, comparing GO term enrichment between gene sets and data visualisation
An R pipeline for .bed file annotation, comparing GO term enrichment between gene sets and data visualisation
A tool to use GO Subtrees to Tag and Annotate Genes within a set
A tool to use GO Subtrees to Tag and Annotate Genes within a set
Augmented functionality for analysis of epigenomic variance
Base package for enabling powerful shiny web displays of Bioconductor objects
Base package for enabling powerful shiny web displays of Bioconductor objects
Better prediction by use of co-data: Adaptive group-regularized ridge regression
Better prediction by use of co-data: Adaptive group-regularized ridge regression
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
Build Annotation From Online Database
Category Analysis
Category Analysis
Client for GREAT Analysis
Client for GREAT Analysis
Client for GREAT Analysis
co-expressed gene-set enrichment analysis
co-expressed gene-set enrichment analysis
Comparison between multiple levels of gene expression
Computation of functional similarities between GO terms and gene products; GO enrichment analysis
Compute cell-type specific enrichments with high resolution
Convenience package for solving some liftover challenges
Convenience package for solving some liftover challenges
Creation and Analysis of Pathway Expression Profiles (PEPs)
Creation and Analysis of Pathway Expression Profiles (PEPs)
dgeAnalysis
Efficient compression and analysis of Hi-C Data
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis
Ensemble of Gene Set Enrichment Analyses
Ensemble of Gene Set Enrichment Analyses
Environment for Gene Expression Searching Combined with Functional Enrichment Analysis
Environment for Gene Expression Searching Combined with Functional Enrichment Analysis
Find the most characteristic gene ontology terms for groups of human genes
Find the most characteristic gene ontology terms for groups of human genes
Find the most characteristic gene ontology terms for groups of human genes
Functional Enrichment analysis
Functional Enrichment analysis
Functional Gene Networks derived from biological enrichment analyses
Functions for Gene Ontology database
GAPGOM (novel Gene Annotation Prediction and other GO Metrics)
GAPGOM (novel Gene Annotation Prediction and other GO Metrics)
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDC
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDC
Gene Ontology analyser for RNA-seq and other length biased data
Gene Ontology analyser for RNA-seq and other length biased data
Gene Ontology analyser for RNA-seq and other length biased data
Gene ontology enrichment using FUNC
Generally Applicable Gene-set Enrichment for Pathway Analysis
Generating Various Molecular Representations for Chemicals, Proteins, DNAs, RNAs and Their Interactions
Generating Various Molecular Representations for Chemicals, Proteins, DNAs, RNAs and Their Interactions
Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions
Gene Set Enrichment Analysis Extended to Contingency Cubes
Gene set enrichment data structures and methods
Gene set enrichment data structures and methods
Gene-set Enrichment with Regularized Regression
Gene-set Enrichment with Regularized Regression
GO-function: deriving biologcially relevant functions from statistically significant functions
goProfiles: an R package for the statistical analysis of functional profiles
goProfiles: an R package for the statistical analysis of functional profiles
GO-terms Semantic Similarity Measures
GO-terms Semantic Similarity Measures
HiPathia: High-throughput Pathway Analysis
HiPathia: High-throughput Pathway Analysis
HiPathia: High-throughput Pathway Analysis
HTSanalyzeR2: An R package for functional annotation, network analysis and time series analysis of high-throughput data
Identifying differential DNA loops from chromatin topology data
Identifying differential DNA loops from chromatin topology data
Identify Moonlighting ncRNAs
Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
Information Accretion-based Function Predictor Evaluation
Interpretation and enrichment for metabolomics data
Interpretation and enrichment for metabolomics data
Judging Quality of Clustering Methods using Mutual Information
Judging Quality of Clustering Methods using Mutual Information
KnowSeq R/Bioc package: Beyond the traditional Transcriptomic pipeline
KnowSeq R/Bioc package: Beyond the traditional Transcriptomic pipeline
Learn and Apply Cell Type Signatures
Learn and Apply Cell Type Signatures
Meta-analysis of high-throughput experiments using feature annotations
Meta-analysis of high-throughput experiments using feature annotations
Meta-analysis of high-throughput experiments using feature annotations
Model-based gene set analysis
Model-based gene set analysis
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Multi Dimensional Gene Set Analysis.
Multi Dimensional Gene Set Analysis.
Multivariate and directional gene set testing
Multivariate and directional gene set testing
Murine Palate miRNA Expression Analysis
NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment
NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment
Optimized Functional Annotation Of ChIP-seq Data
Optimized Functional Annotation Of ChIP-seq Data
Optimized Functional Annotation Of ChIP-seq Data
Package for CTDbase data query, visualization and downstream analysis
Package for CTDbase data query, visualization and downstream analysis
Package for enabling powerful shiny web displays of Bioconductor objects
Package for Fold-specific GO Terms Recognition
Package for Fold-specific GO Terms Recognition
Package for Fold-specific GO Terms Recognition
pcaGoPromoter is used to analyze DNA micro array data
PKG_TITLE
Plot Gene Ontology and KEGG pathway Annotation and Abundance
processing of ontologies of anatomy, cell lines, and so on
processing of ontologies of anatomy, cell lines, and so on
Provides a GUI for DAPAR
Provides a GUI for DAPAR
Reduce + Visualize GO
Reduce + Visualize GO
Reduce + Visualize GO
Reduce + Visualize GO
Representing Different Biological Sets
Representing Different Biological Sets
Representing Different Biological Sets
Representing Different Biological Sets
R Interface to UniProt Web Services
R Interface to UniProt Web Services
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
R Interface with InterMine-Powered Databases
RNA Centric Annotation System
RNA Centric Annotation System
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
R wrapper for the OMA REST API
R wrapper for the OMA REST API
R wrapper for the OMA REST API
R wrapper for the OMA REST API
Select gold standard including positive and negative genes pairs based on the Gene Ontology
SEPA
SEPA
Significant Biology on a Gene Set
Simplified RNA-Seq Analysis Pipeline
Simplify Functional Enrichment Results
Simplify Functional Enrichment Results
Single cell replicability analysis
Single cell replicability analysis
statistical analysis and visualization of functional profiles for genes and gene clusters
statistical analysis and visualization of functional profiles for genes and gene clusters
statistical analysis and visualization of functional profiles for genes and gene clusters
statistical analysis and visualization of functional profiles for genes and gene clusters
Statistical analysis of high-throughput RNAi screens
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing
Tools for making reports in various formats
Tools for making reports in various formats
Tools for manipulating GO and microarrays
Tools for manipulating GO and microarrays
Tools for the Differential Analysis of Proteins Abundance with R
Tools for the Differential Analysis of Proteins Abundance with R
Tools for the Differential Analysis of Proteins Abundance with R
ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity
ViSEAGO: Easier data mining of biological functions organized into clusters using Gene Ontology and semantic similarity
Visualise microarray and RNAseq data using gene ontology annotations
Visualise microarray and RNAseq data using gene ontology annotations
Visualise microarray and RNAseq data using gene ontology annotations
Visualise microarray and RNAseq data using gene ontology annotations
Visualization of Functional Enrichment Result
Visualization of Functional Enrichment Result
Visualization of Functional Enrichment Result
Visualize biclusters identified in gene expression data
Word cloud summaries of GO enrichment analysis
Word cloud summaries of GO enrichment analysis
Yet Another Gene Ontology Package
You Only Lookup One (small part of an otherwise large matrix)
You Only Lookup One (small part of an otherwise large matrix)