MmPalateMiRNA: Murine Palate miRNA Expression Analysis

R package compendium for the analysis of murine palate miRNA two-color expression data.

Author
Guy Brock <guy.brock@louisville.edu>, Partha Mukhopadhyay <p0mukh01@louisville.edu>, Vasyl Pihur <vasyl.pihur@louisville.edu>, Robert M. Greene <Dr.Bob.Greene@gmail.com>, and M. Michele Pisano <mmpisa01@louisville.edu>
Date of publication
None
Maintainer
Guy Brock <guy.brock@louisville.edu>
License
GPL-3
Version
1.24.0

View on Bioconductor

Man pages

checkMVs
Check an 'RGList' object for missing values
checkOutliers
Check 'RGList' object for outlying values
clustPlot
Plot expression profiles
densityplot
Density plots of log2 intensity values
filterArray
Filter an 'RGList' object to remove probes
fixMVs
'Fix' an 'RGList' object with missing values.
fixOutliers
'Fix' an 'RGList' object with outlying values.
imputeKNN
Impute missing values
levelplot
Pairwise distance between arrays
MADvsMedianPlot
Spread vs location of probe intensities
MAplot
MA plot
MmPalateMiRNA-package
R package compendium for the analysis of murine palate...
PalateData
Murine Secondary Palate Development miRNA Expression Data

Files in this package

MmPalateMiRNA/DESCRIPTION
MmPalateMiRNA/NAMESPACE
MmPalateMiRNA/R
MmPalateMiRNA/R/MmPalateMiRNA-Methods.R
MmPalateMiRNA/R/MmPalateMiRNA-functions.R
MmPalateMiRNA/build
MmPalateMiRNA/build/vignette.rds
MmPalateMiRNA/data
MmPalateMiRNA/data/PalateData.rda
MmPalateMiRNA/inst
MmPalateMiRNA/inst/doc
MmPalateMiRNA/inst/doc/MmPalateMiRNA.R
MmPalateMiRNA/inst/doc/MmPalateMiRNA.Rnw
MmPalateMiRNA/inst/doc/MmPalateMiRNA.pdf
MmPalateMiRNA/man
MmPalateMiRNA/man/MADvsMedianPlot.Rd
MmPalateMiRNA/man/MAplot.Rd
MmPalateMiRNA/man/MmPalateMiRNA-package.Rd
MmPalateMiRNA/man/PalateData.Rd
MmPalateMiRNA/man/checkMVs.Rd
MmPalateMiRNA/man/checkOutliers.Rd
MmPalateMiRNA/man/clustPlot.Rd
MmPalateMiRNA/man/densityplot.Rd
MmPalateMiRNA/man/filterArray.Rd
MmPalateMiRNA/man/fixMVs.Rd
MmPalateMiRNA/man/fixOutliers.Rd
MmPalateMiRNA/man/imputeKNN.Rd
MmPalateMiRNA/man/levelplot.Rd
MmPalateMiRNA/vignettes
MmPalateMiRNA/vignettes/MmPalateMiRNA.Rnw
MmPalateMiRNA/vignettes/auto
MmPalateMiRNA/vignettes/auto/MmPalateMiRNA.el
MmPalateMiRNA/vignettes/auto/PalateMiRNAComp.el
MmPalateMiRNA/vignettes/auto/gbMacros.el
MmPalateMiRNA/vignettes/gbMacros.sty
MmPalateMiRNA/vignettes/miRNA_Refs.bib