Plots the estimated density of log2 intensity values for two-color microarrays
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The channel to use for calculating distances, one of either "G" (green or control channel) or "R" (red or experimental channel)
An optional character string specifying the name of a
factor to create separate panel displays, which must be in
An optional character vector specifying the which levels
arguments to pass to
signature(x = "RGList", data = "missing")
RGList objects, separate panel
can be produced for different types of probes, as determined by the
signature(x = "list", data = "missing")
The method for
list objects is intended
to work with lists of normalized data sets, as either
NChannelSet objects. This
method will produce separate panel displays for each normalized data
set, additionally subsetted by the
group argument if supplied.
useOuterStrips function in the latticeExtra package
can be used for ‘outer’ strip labels in the latter case.
D. Sarkar, R. Parkin, S. Wyman, A. Bendoraite, C. Sather, J. Delrow, A. K. Godwin, C. Drescher, W. Huber, R. Gentleman, and M. Tewari. Quality assessment and data analysis for microRNA expression arrays. Nucleic Acids Res, 37(2):e17, 2009.
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