Density plots of log2 intensity values
Plots the estimated density of log2 intensity values for two-color microarrays
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The channel to use for calculating distances, one of either "G" (green or control channel) or "R" (red or experimental channel)
An optional character string specifying the name of a
factor to create separate panel displays, which must be in
An optional character vector specifying the which levels
arguments to pass to
signature(x = "RGList", data = "missing")
RGListobjects, separate panel displays can be produced for different types of probes, as determined by the
signature(x = "list", data = "missing")
The method for
listobjects is intended to work with lists of normalized data sets, as either
NChannelSetobjects. This method will produce separate panel displays for each normalized data set, additionally subsetted by the
groupargument if supplied. The
useOuterStripsfunction in the latticeExtra package can be used for ‘outer’ strip labels in the latter case.
D. Sarkar, R. Parkin, S. Wyman, A. Bendoraite, C. Sather, J. Delrow, A. K. Godwin, C. Drescher, W. Huber, R. Gentleman, and M. Tewari. Quality assessment and data analysis for microRNA expression arrays. Nucleic Acids Res, 37(2):e17, 2009.
levelplot for pairwise distance
plots between arrays,
MADvsMedianPlot for median
absolute deviation versus median plots, and
MAplot for MA plots
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